View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20619_high_42 (Length: 248)

Name: NF20619_high_42
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20619_high_42
NF20619_high_42
[»] chr3 (7 HSPs)
chr3 (46-248)||(1727420-1727622)
chr3 (154-248)||(15669246-15669337)
chr3 (168-213)||(13147007-13147052)
chr3 (171-213)||(15841106-15841148)
chr3 (168-213)||(1061431-1061476)
chr3 (168-213)||(12240464-12240509)
chr3 (168-213)||(18004834-18004879)
[»] chr7 (4 HSPs)
chr7 (158-248)||(24832055-24832145)
chr7 (15-46)||(13877045-13877076)
chr7 (64-122)||(27289231-27289289)
chr7 (168-213)||(13177379-13177424)
[»] chr2 (1 HSPs)
chr2 (168-213)||(24804576-24804621)
[»] chr1 (3 HSPs)
chr1 (46-143)||(27518805-27518902)
chr1 (168-213)||(19162628-19162673)
chr1 (168-213)||(22652536-22652581)
[»] scaffold0382 (2 HSPs)
scaffold0382 (168-213)||(4230-4275)
scaffold0382 (168-213)||(12613-12658)
[»] scaffold0211 (1 HSPs)
scaffold0211 (168-213)||(2629-2674)
[»] chr8 (3 HSPs)
chr8 (168-221)||(23802576-23802629)
chr8 (168-213)||(3840826-3840871)
chr8 (168-213)||(23790529-23790574)
[»] chr6 (4 HSPs)
chr6 (168-213)||(17611499-17611544)
chr6 (74-123)||(12349486-12349535)
chr6 (168-213)||(17780873-17780918)
chr6 (168-213)||(22383858-22383903)
[»] chr4 (2 HSPs)
chr4 (15-46)||(15867203-15867234)
chr4 (76-123)||(39042706-39042753)
[»] scaffold0010 (1 HSPs)
scaffold0010 (168-213)||(112857-112902)
[»] chr5 (3 HSPs)
chr5 (168-213)||(13531066-13531111)
chr5 (168-213)||(23485971-23486016)
chr5 (168-213)||(25182199-25182244)
[»] scaffold0892 (1 HSPs)
scaffold0892 (169-213)||(1346-1390)
[»] scaffold0016 (1 HSPs)
scaffold0016 (168-216)||(197574-197622)
[»] scaffold0012 (1 HSPs)
scaffold0012 (168-216)||(135591-135639)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 46 - 248
Target Start/End: Complemental strand, 1727622 - 1727420
Alignment:
Q  46 ctttcagtgttaatgtttggaaaatatgcttttctcttgtcatgtgtcatgagtaaccactgttcaagtaccatgactgaagcgttggttctcccataaa 145  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  1727622 ctttcagtgttaatgtttggaaaatgtgcttttctcttgtcatgtgtcatgagtaaccactgtccaggtaccatgactgaagcgttggttctcccataaa 1727523  T
Q  146 gtgtttctgtagcatagaaaatttcagacttaggtacacatatattcatgggttctttggggttagttatgaaggacttttccttcttcagaaccttagg 245  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |||||    
T  1727522 gtgtttctgtagcatataaaatttcagacttaggtacacatattttcatgggttctttggggttagctctgaaggacttttccttcttcagaactttagg 1727423  T
Q  246 ctt 248  Q
    |||    
T  1727422 ctt 1727420  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 15669337 - 15669246
Alignment:
Q  154 gtagcatagaaaatttcagacttaggtacacatatattcatgggttctttggggttagttatgaaggacttttccttcttcagaaccttaggctt 248  Q
    |||||||||||||||| ||||||| |||| ||||| ||||||||| |||||| ||| ||| | ||| | |||||   ||||||||||||||||||    
T  15669337 gtagcatagaaaattttagacttatgtacccatattttcatgggtcctttggtgtttgttctaaagtatttttc---cttcagaaccttaggctt 15669246  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 13147007 - 13147052
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  13147007 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 13147052  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 15841106 - 15841148
Alignment:
Q  171 agacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    |||||||||||| ||||| ||||||||| ||||||||||||||    
T  15841106 agacttaggtacccatatcttcatgggtcctttggggttagtt 15841148  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 1061431 - 1061476
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  1061431 ttcagacttaggtacccatatcttcatgggtccttttgggttagtt 1061476  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 12240509 - 12240464
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    |||||| |||||||| ||||| |||||||||||||| |||||||||    
T  12240509 ttcagatttaggtacccatatcttcatgggttcttttgggttagtt 12240464  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 18004834 - 18004879
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    |||||| |||||||| ||||| ||||||||| ||||||||||||||    
T  18004834 ttcagatttaggtacccatatcttcatgggtcctttggggttagtt 18004879  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 24832055 - 24832145
Alignment:
Q  158 catagaaaatttcagacttaggtacacatatattcatgggttctttggggttagttatgaaggacttttccttcttcagaaccttaggctt 248  Q
    ||||||||||||||||| | ||||| ||||| ||||||||| |||||||||||||| | ||||| |||||||| |||| | | ||||||||    
T  24832055 catagaaaatttcagacgtgggtacccatattttcatgggtactttggggttagttctaaaggaattttcctttttcatacctttaggctt 24832145  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 13877045 - 13877076
Alignment:
Q  15 ttaccaatagttcatgtaccaataatcttgcc 46  Q
    ||||||||||||||||||||||||||||||||    
T  13877045 ttaccaatagttcatgtaccaataatcttgcc 13877076  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 27289289 - 27289231
Alignment:
Q  64 ggaaaatatgcttttctcttgtcatgtgtcatgagtaaccactgttcaagtaccatgac 122  Q
    |||| ||| ||||||||| ||||||||| || ||| ||||||||| |||||||||||||    
T  27289289 ggaacataggcttttctcctgtcatgtgacacgagcaaccactgtccaagtaccatgac 27289231  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 13177424 - 13177379
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  13177424 ttcagacttaggtacccatatcttcatgggtcctttagggttagtt 13177379  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 24804621 - 24804576
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  24804621 ttcagacttaggtacccatatcttcatgggttctttggggttagtt 24804576  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 27518902 - 27518805
Alignment:
Q  46 ctttcagtgttaatgtttggaaaatatgcttttctcttgtcatgtgtcatgagtaaccactgttcaagtaccatgactgaagcgttggttctcccata 143  Q
    |||||| |||||  |||||||| |||||||||||| ||||||||| ||  ||| ||| |||||||| |||||||||||| | | ||| ||||||||||    
T  27518902 ctttcaatgttagggtttggaacatatgcttttctattgtcatgtatcgggagcaactactgttcaggtaccatgactggaactttgattctcccata 27518805  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 19162673 - 19162628
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  19162673 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 19162628  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 22652536 - 22652581
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  22652536 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 22652581  T

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Target: scaffold0382 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0382
Description:

Target: scaffold0382; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 4275 - 4230
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  4275 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 4230  T

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Target: scaffold0382; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 12658 - 12613
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  12658 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 12613  T

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Target: scaffold0211 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 2674 - 2629
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  2674 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 2629  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 23802576 - 23802629
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagttatgaagga 221  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||||| ||||    
T  23802576 ttcagacttaggtacccatatcttcatgggtccttttgggttagttatggagga 23802629  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 3840826 - 3840871
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  3840826 ttcagacttaggtacccatatcttcatgggtccttttgggttagtt 3840871  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 23790529 - 23790574
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  23790529 ttcagacttaggtacccatatcttcatgggtccttttgggttagtt 23790574  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 17611544 - 17611499
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  17611544 ttcagacttaggtacccatatcttcatgggtcctttggggttagtt 17611499  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 12349486 - 12349535
Alignment:
Q  74 cttttctcttgtcatgtgtcatgagtaaccactgttcaagtaccatgact 123  Q
    |||||||| ||||||||||| |||| ||||||||| || |||||||||||    
T  12349486 cttttctcctgtcatgtgtcgtgagcaaccactgtacaggtaccatgact 12349535  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 17780873 - 17780918
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  17780873 ttcagacttaggtacccatatcttcatgggtccttttgggttagtt 17780918  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 22383858 - 22383903
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| ||||| ||||||||    
T  22383858 ttcagacttaggtacccatattttcatgggtcctttgaggttagtt 22383903  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 15867234 - 15867203
Alignment:
Q  15 ttaccaatagttcatgtaccaataatcttgcc 46  Q
    ||||||||||||||||||||||||||||||||    
T  15867234 ttaccaatagttcatgtaccaataatcttgcc 15867203  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 39042706 - 39042753
Alignment:
Q  76 tttctcttgtcatgtgtcatgagtaaccactgttcaagtaccatgact 123  Q
    |||||||||||||||||| |||| ||||||||| || |||||||||||    
T  39042706 tttctcttgtcatgtgtcgtgagcaaccactgtccaggtaccatgact 39042753  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 112857 - 112902
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  112857 ttcagacttaggtacccatatcttcatgggtacttttgggttagtt 112902  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 13531066 - 13531111
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  13531066 ttcagacttaggtacccatatcttcatgggtccttttgggttagtt 13531111  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 23485971 - 23486016
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    ||||||||||||||| ||||| |||||| || ||||||||||||||    
T  23485971 ttcagacttaggtacccatatcttcatgtgtcctttggggttagtt 23486016  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 25182244 - 25182199
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    |||| |||||||||| ||||| ||||||||| ||||||||||||||    
T  25182244 ttcaaacttaggtacgcatatcttcatgggtcctttggggttagtt 25182199  T

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Target: scaffold0892 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 1390 - 1346
Alignment:
Q  169 tcagacttaggtacacatatattcatgggttctttggggttagtt 213  Q
    |||||||||||||| ||||| ||||||||| |||| |||||||||    
T  1390 tcagacttaggtacccatatcttcatgggtccttttgggttagtt 1346  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 197574 - 197622
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagttatg 216  Q
    |||||| |||||||| ||||| ||||||||| |||| ||||||||||||    
T  197574 ttcagatttaggtacccatatcttcatgggtccttttgggttagttatg 197622  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 135591 - 135639
Alignment:
Q  168 ttcagacttaggtacacatatattcatgggttctttggggttagttatg 216  Q
    |||||| |||||||| ||||| ||||||||| |||| ||||||||||||    
T  135591 ttcagatttaggtacccatatcttcatgggtcctttagggttagttatg 135639  T

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