View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_11 (Length: 463)
Name: NF20619_low_11
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Complemental strand, 1727426 - 1726991
Alignment:
| Q |
13 |
taggcttcaagatatgcggcttagaatcattcaagacttttggtttaaaggttttaggtcttgaattcttcttagctttaggttttgaactatttagaac |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1727426 |
taggcttcaagatatgtggcttagaatcattcaagacttttggtttaaaggttttaggtcttgaattcttcttagctttaggttttgaactattcagaac |
1727327 |
T |
|
| Q |
113 |
cttggactctggaatatttggttttgatttgattagatccttagactctaaagcccttgactttgactcgttaagaaccttagctttccca-cttttgga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| || |
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| T |
1727326 |
cttggactctggaatatttggttttgatttgattagatccttagactctaaagcccttgactttgacttgttaagaaccttagcttttccagcttttaga |
1727227 |
T |
|
| Q |
212 |
acaaagtaggaatacataccattttgtatgaactcagcacaaggatgtttctttgatttctccaaaacctgcttcctcttaagaggtgcttctactgaga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | ||| ||| |||||||||| |||||||||||||||| |
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| T |
1727226 |
acaaagtaggaatacataccattttgtatgaactcagcataaggaggtttctttgatttctctagaacatgcatcctcttaagcggtgcttctactgaga |
1727127 |
T |
|
| Q |
312 |
aactaattcattctcctttgtttcatgcttgttcagaggtttatcagctttctcttgagtatatgaaatttgacatctctctag-attacctcatcaaga |
410 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
1727126 |
aactaattcattcttctttgtttcatgcttgttcagaggtttatcagctttctcttgagtatatgaaatttgacatttctctagaattacctcatcaaga |
1727027 |
T |
|
| Q |
411 |
gattttcattccatatactcagagtcttagattcctctg |
449 |
Q |
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|| |||||||||||||||||||||||||||||||||| |
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| T |
1727026 |
ga---tcattccatatactcagagtcttagattcctctg |
1726991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 15669252 - 15669120
Alignment:
| Q |
13 |
taggcttcaagatatgcggcttagaatcattcaagacttttggtttaaaggttttaggtcttgaattcttcttagctttaggttttgaactatttagaac |
112 |
Q |
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||||||||||| ||| || ||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |||||| ||||| |
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| T |
15669252 |
taggcttcaagctatatggattagaatcattgaagacttttggtttaaaagttttaggccttgaattcttattagctttaggttttggactattcagaac |
15669153 |
T |
|
| Q |
113 |
cttggactctggaatatttggttttgatttgat |
145 |
Q |
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|||||| |||||| ||||||||||||||||| |
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| T |
15669152 |
tttggacattggaatctttggttttgatttgat |
15669120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 15668903 - 15668857
Alignment:
| Q |
333 |
ttcatgcttgttcagaggtttatcagctttctcttgagtatatgaaa |
379 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
15668903 |
ttcatgcttgttcagaggtttatcagcttttttctgagtatatgaaa |
15668857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 19220251 - 19220144
Alignment:
| Q |
60 |
aaggttttaggtcttgaattcttcttagctttaggttttgaactatttagaaccttggactctggaatatttggttttgatttgattagatccttagact |
159 |
Q |
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|||||||| | ||||||||||||| ||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||| | ||| |||||||| |
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| T |
19220251 |
aaggtttttgatcttgaattcttcatagctttaggttttgaactcttcagaaccttggactctgaagtatttggttttgatttgttcagaaacttagact |
19220152 |
T |
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| Q |
160 |
ctaaagcc |
167 |
Q |
| |
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|| ||||| |
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| T |
19220151 |
ctgaagcc |
19220144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 176 - 335
Target Start/End: Original strand, 17234088 - 17234248
Alignment:
| Q |
176 |
tgactcgttaagaaccttagctttccca-cttttggaacaaagtaggaatacataccattttgtatgaactcagcacaaggatgtttctttgatttctcc |
274 |
Q |
| |
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||||| ||| |||||||||| ||| ||| |||||||||||||||||||||||||| || ||||| ||||| ||||||| |||||||||||||||| |
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| T |
17234088 |
tgacttgttcagaaccttagtttttccagcttttggaacaaagtaggaatacatattgttctgtatacactcataacaaggaggtttctttgatttctct |
17234187 |
T |
|
| Q |
275 |
aaaacctgcttcctcttaagaggtgcttctactgagaaactaattcattctcctttgtttc |
335 |
Q |
| |
|
| | ||| || ||||||||||||||||| | |||||| ||||| |||||| ||||||| |
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| T |
17234188 |
agattttgcatcgtcttaagaggtgcttcttttaagaaaccaattccttctccgttgtttc |
17234248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 271
Target Start/End: Complemental strand, 11451103 - 11450873
Alignment:
| Q |
42 |
ttcaagacttttggtttaaaggttttaggtcttgaattcttcttagctttaggttttgaactatttagaaccttggactctggaatatttggttttgatt |
141 |
Q |
| |
|
||||||||||||| |||| | ||||| |||||||||| ||| | ||||| ||||||||||| || |||| |||| || || | ||||||||||||| |
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| T |
11451103 |
ttcaagacttttgatttacaagtttttggtcttgaatctttccttgctttgggttttgaactcttcagaaacttgagttcaagagtctttggttttgatt |
11451004 |
T |
|
| Q |
142 |
tgattagatccttagactctaaagcccttgactttgactcgttaagaaccttagctttccca-cttttggaacaaagtaggaatacataccattttgtat |
240 |
Q |
| |
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|||| ||| ||||||||||||| | | || | ||||| ||| |||||||||||||| || | ||||||||||||| |||||||| ||| |||||||| |
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| T |
11451003 |
tgatcagaaccttagactctaaggtctcagattctgacttgttcagaaccttagctttttcagcctttggaacaaagtgggaatacaaacccttttgtat |
11450904 |
T |
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| Q |
241 |
gaactcagcacaaggatgtttctttgatttc |
271 |
Q |
| |
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| ||||| ||||||| |||||||| |||| |
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| T |
11450903 |
gcactcataacaaggagttttctttgttttc |
11450873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 271
Target Start/End: Original strand, 11543631 - 11543862
Alignment:
| Q |
41 |
attcaagacttttggtttaaaggttttaggtcttgaattcttcttagctttaggttttgaactatttagaaccttggactctggaatatttggttttgat |
140 |
Q |
| |
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|||||||||||||| |||| | ||||| |||||||||| ||| | |||| ||||||||||| || ||| |||| || || | |||||||||||| |
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| T |
11543631 |
attcaagacttttgatttacaagtttttggtcttgaatctttccttactttgggttttgaactcttctgaaacttgagttcaagagtctttggttttgat |
11543730 |
T |
|
| Q |
141 |
ttgattagatccttagactctaaagcccttgactttgactcgttaagaaccttagctttccca-cttttggaacaaagtaggaatacataccattttgta |
239 |
Q |
| |
|
||||| ||| ||||||| | ||| | | || | ||||| ||| |||||||||||||| || | ||||||||||||| |||||||| ||| ||||||| |
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|
| T |
11543731 |
ttgatcagaaccttagattgtaaggtctcagattctgacttgttcagaaccttagctttttcagcctttggaacaaagtgggaatacaaacccttttgta |
11543830 |
T |
|
| Q |
240 |
tgaactcagcacaaggatgtttctttgatttc |
271 |
Q |
| |
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|| ||||| ||||||| ||||||||| |||| |
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| T |
11543831 |
tgcactcataacaaggaggtttctttgttttc |
11543862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 4447123 - 4447191
Alignment:
| Q |
54 |
ggtttaaaggttttaggtcttgaattcttcttagctttaggttttgaactatttagaaccttggactct |
122 |
Q |
| |
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||||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||||| |||| |
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|
| T |
4447123 |
ggtttaaaggtttcatatcttgaattcttcttagatttaggttttgaactctttagaaccttgggctct |
4447191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 20093884 - 20093975
Alignment:
| Q |
243 |
actcagcacaaggatgtttctttgatttctccaaaacctgcttcctcttaagaggtgcttctactgagaaactaattcattctcctttgttt |
334 |
Q |
| |
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|||||| ||||||| |||||||| |||||| | ||||| | ||| |||||||||| |||| ||||||||||||||| ||||||||||||| |
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|
| T |
20093884 |
actcagaacaaggaggtttctttcatttctgtagaaccttcatccatttaagaggtgtttcttctgagaaactaattccttctcctttgttt |
20093975 |
T |
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