View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_13 (Length: 430)
Name: NF20619_low_13
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 2643133 - 2643433
Alignment:
| Q |
18 |
tggaaaggctcattttctgtacaaatagactttatttaatttatattctgaaatttatacaattccagcattacagactcaaataatagcatgagacaa- |
116 |
Q |
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| T |
2643133 |
tggaaaggctcattttctgtacaaatagactttatttaatttatattctgaaatttatacaattccagcattacagactcaaataatagcatgagacaac |
2643232 |
T |
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| Q |
117 |
--cagggtatttacaataggaaatttatacacttccggaaataccataatagattactcttccagcaatacagactcaaataatagcatcacacaacaag |
214 |
Q |
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| T |
2643233 |
aacagggtatttacaataggaaatttatacacttccggaaataccataatagattactcttccagcaatacagactcaaataatagcatcacacaacaag |
2643332 |
T |
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| Q |
215 |
taatttacaatagggaatttatacaattccagcaatactataatatattacacacnnnnnnnattttacaatatagatagattgcatctctttttgttga |
314 |
Q |
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| T |
2643333 |
taatttacaatagggaatttatacaattccagcaatactataatatattacacactttttttattttacaatatagatagattgcatctctttttgttga |
2643432 |
T |
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| Q |
315 |
t |
315 |
Q |
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| T |
2643433 |
t |
2643433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 2643441 - 2643495
Alignment:
| Q |
305 |
tttttgttgataatggattgcatttcttactcctcagcaatataccaatagatggaa |
361 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
2643441 |
tttttgttgataatagattgcatttcttactcctcagca--ataccaatagatggaa |
2643495 |
T |
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