View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_15 (Length: 401)
Name: NF20619_low_15
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 103 - 382
Target Start/End: Original strand, 19165899 - 19166176
Alignment:
| Q |
103 |
ggacatatcaagagattaagaacgactcgacgacgcaggtaatgggcttgaagtttgacatagcagggatgactctagggtttatcaacggtcttcacaa |
202 |
Q |
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| T |
19165899 |
ggacatatcaagagattcagaacgactcgacgacacaggtaatgggctggaagtttgacatagcagggatgactctagggtttattaacggtcttcacaa |
19165998 |
T |
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| Q |
203 |
ggtttggcggatgcgattccttctacaggtggtacaggcaagtgcgtttctactcatgcgcgtttgtacgtgaatggcatatggcttatgagctcgacat |
302 |
Q |
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| T |
19165999 |
ggtttggcagatgcgattccttctacaggtggtacaggaaagtgcgtttctactcatgcgcgtttgtacgtgaatggc--atggcttctgagctcgacat |
19166096 |
T |
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| Q |
303 |
ttatgattagaatggactagacatatcagtttatggatggaaggtttctttctacttcaccaacacaccagaatgcattc |
382 |
Q |
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| T |
19166097 |
ttatgattagaatggactagacatatcagtttatggatggaaggtttctttcaacttcaccaacacactggaatgcattc |
19166176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 19165754 - 19165793
Alignment:
| Q |
60 |
caaccgcgccggagtaactcgctggcggagacgaacattg |
99 |
Q |
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| T |
19165754 |
caaccgcgccggagtaactcgctggcggagaggaacattg |
19165793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 19165726 - 19165758
Alignment:
| Q |
11 |
cagagagagaggtcatgagagtcacggccaacc |
43 |
Q |
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| T |
19165726 |
cagagagagaggtcatgagagtcacggccaacc |
19165758 |
T |
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