View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_17 (Length: 378)
Name: NF20619_low_17
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 34472890 - 34473245
Alignment:
| Q |
1 |
agtggctgagattctaccgaatctccaatcattgtaggggatctactcccggacagaactagaccactagctcactctcaaccaaaacaactaggttact |
100 |
Q |
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| T |
34472890 |
agtggctgagattctaccgaatctccaatcattgtaggggatctactcccggacagaactagaccactagctcactctcaaccaaaacaactaggttact |
34472989 |
T |
|
| Q |
101 |
ccttcaatgccaattgattgtgaaattctaaaaactaatcatcattctcatttaacaataaattaaagttactaactcgagatatatcaatagttaaatt |
200 |
Q |
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| T |
34472990 |
ccttcaatgccaattgattgtgaaattctaaaaactaatcatcattctcatttaacaataaattaaagttactaactcgagatatatcaatagttaaatt |
34473089 |
T |
|
| Q |
201 |
tatgataaagtaaaacccctgca-nnnnnnnnngtcaatgtaaaattaaaccaaaaatctaaaagcgcctagatccgagtattctctaacttaattaaga |
299 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473090 |
tatgataaagtaaaacccctgcattttttttttgtcaatgtaaaattaaaccaaaaatctaaaagcgcctagatccgagtattctctaacttaattaaga |
34473189 |
T |
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| Q |
300 |
tttcaagtttaaattcgaactttaaacctctttatttgaatcacataagatttaag |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473190 |
tttcaagtttaaattcgaactttaaacctctttatttgaatcacataagatttaag |
34473245 |
T |
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