View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_19 (Length: 358)
Name: NF20619_low_19
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 32463004 - 32462830
Alignment:
| Q |
19 |
tgactgacaatgtagtgtccatcccaaagcacaacagggtagaagatacaactataatcaattttggtccttccaaaattgaaaccaaactacacgtatt |
118 |
Q |
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| T |
32463004 |
tgactgacaatgtagtgtccatcccaaagcacaacaggggagaagatacatctataatcaattttggtccttccaaaattgaaaccaaactacacgtatt |
32462905 |
T |
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| Q |
119 |
ggac---gggtctagtatttttctattcatttcaaaactttggttagttaatcattttagatatgtttcaaaatt |
190 |
Q |
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| T |
32462904 |
ggaccattggtctagtatttttctattcatttcaaaactttggttagttaatcattttagatatgtttcaaaatt |
32462830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 199 - 343
Target Start/End: Complemental strand, 32462759 - 32462634
Alignment:
| Q |
199 |
acatttatagacatgtgaataaactttattgattacaatatatgttagtatttagaatactattggtacaaatgaatcaagttatagaatggtgggatag |
298 |
Q |
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| T |
32462759 |
acatttatagacatgtgaataaactttattgattacaatatatgttagtattt-------------------tgaatcaagttatagaatggtgggatag |
32462679 |
T |
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| Q |
299 |
tatagactagaagtgtgggggtggtgccgtataagcagttgtata |
343 |
Q |
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| T |
32462678 |
tatagactagaagtgtgggggtggtgccgtataagcagttgtata |
32462634 |
T |
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