View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_2 (Length: 796)
Name: NF20619_low_2
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 760; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 9 - 796
Target Start/End: Original strand, 31192939 - 31193726
Alignment:
| Q |
9 |
catcatcagttcagatgagcatctcagtcggaccagcaggagtacataacagaatgaacttaaacaagaacacacagaagtcacaatctcaaataaatca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31192939 |
catcatcagttcagatgagcatctcagtcggaccagcaggagtacataacagaatgaacttaaacaagaacacacagaagtcacaatctcaaataaatca |
31193038 |
T |
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| Q |
109 |
taaaatatctacatgcaatggttacaaatcagctaatttcaaaaccaacctaaacaagaacacacagttacactcctaggtaacaaagatctgaatctgc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31193039 |
taaaatatctacatgcaatggttacaaatcagctaatttcaaaaccaacctaaacaagaacacacagttacactcctaggtaacaaagatctgaatctgc |
31193138 |
T |
|
| Q |
209 |
aaaatagaattaaatcaaatcatacaaagatatcatatacagtcttggaattcaggttgggcctaactcaacccctaaaaaaccaacttttaacgttagg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31193139 |
aaaatagaattaaatcaaatcatacaaagatatcatatacagtcttggaattcaggctgggcctaactcaacccctaaaaaaccaacttttaacattagg |
31193238 |
T |
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| Q |
309 |
atagccccaacctataaacatattttcaggttttatctcgtccaatccaatgtgctactcttaacacacacccctcagcccaagaatggaaatctggagt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31193239 |
atagccccaacctataaacatattttcaggttttatctcgtccaatccaatgtgctactcttaacacacacccctcagcccaataatggaaatctggagt |
31193338 |
T |
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| Q |
409 |
gtgaccttagtggcctgatagcagtaatctaatgcaagcaggtggtccaattgatcttagataagctctgctaccatattagaatttgagttcggccaaa |
508 |
Q |
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| T |
31193339 |
gtgaccttagtggcctgatagcagtaatctaatgcaagcaggtggtccaattgatcttagataagctctgctaccatattagaatttgagttcggccaaa |
31193438 |
T |
|
| Q |
509 |
ctcaacccatacaaaattgacttgtatggtgagaatcgtctccacttataaacacattacaatcaagttgaaagaagcgagaatcatctacttattcaat |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31193439 |
ctcaacccatacaaaattgacttgtatggtgagaatcgtctccacttataaacacattacaatcaagttgaaagaagcgagaatcatctacttattcaat |
31193538 |
T |
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| Q |
609 |
atcataacattaacataatagcatacatttttgctccaaattaaatccactaggctgcatactgaaactattatagaacaattaagagctaacttaccat |
708 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
31193539 |
atcataacattaagataatagcatacatttttgctccaaattaaatccactaggctgcatacggaaactattatagaacaattaagacctaacttaccat |
31193638 |
T |
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| Q |
709 |
ttcctggattttaacctaggccgaacagaaatcaccgtccaacagtatcatgcgtgtgtacattttcaacaaattgaaatcatcgatc |
796 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31193639 |
ttcctggattttaacctaggctgaacagaaatcaccgtccaacagtatcatgcgtgtgtacattttcaacaaattgaaatcatcgatc |
31193726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 323
Target Start/End: Original strand, 31014682 - 31014996
Alignment:
| Q |
9 |
catcatcagttcagatgagcatctcagtcggaccagcaggagtacataacagaatgaacttaaacaagaacacacagaagtcacaatctcaaataaatca |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31014682 |
catcatcagttcagatgagcatctcagtcggaccagcaggagtacataacagaaagaacttaaacaagaacacacagaagtcacaatctctaataaatca |
31014781 |
T |
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| Q |
109 |
taaaatatctacatgcaatggttacaaatcagctaatttcaaaaccaacctaaacaagaacacacagttacactcctaggtaacaaagatctgaatctgc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31014782 |
taaaatatctacatgcaatggttacaaatcagctaacttcaaaaccaacctaaacaagaacacacagtcacactcctaggtaacaaagatctgaatctgc |
31014881 |
T |
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| Q |
209 |
aaaatagaattaaatcaaatcatacaaagatatcatatacagtcttggaattcaggttgggcctaactcaacccctaaaaaaccaacttttaacgttagg |
308 |
Q |
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||||||||||||||||||||||||||||||||||| | || ||||| ||||||| ||||||||||||||||| |||| ||||||||||| |||||||||| |
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| T |
31014882 |
aaaatagaattaaatcaaatcatacaaagatatcacaaacggtcttagaattcaagttgggcctaactcaactcctacaaaaccaacttgtaacgttagg |
31014981 |
T |
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| Q |
309 |
atagccccaacctat |
323 |
Q |
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|||||||| |||||| |
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| T |
31014982 |
atagcccccacctat |
31014996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 566 - 796
Target Start/End: Original strand, 31015342 - 31015572
Alignment:
| Q |
566 |
tacaatcaagttgaaagaagcgagaatcatctacttattcaatatcataacattaacataatagcatacatttttgctccaaattaaatccactaggctg |
665 |
Q |
| |
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|||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31015342 |
tacagtcaagtcgagagaagcgagaatcatctacttattcaatatcataacattaacataatagcacacatttttgctccaaattaaatccactaggctg |
31015441 |
T |
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| Q |
666 |
catactgaaactattatagaacaattaagagctaacttaccatttcctggattttaacctaggccgaacagaaatcaccgtccaacagtatcatgcgtgt |
765 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31015442 |
catactgaaactattatagaacaattaagacctaacttaccatttcctggattttaacctaggctgaacagaaatcaccgtccaacagtatcatgcgtgt |
31015541 |
T |
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| Q |
766 |
gtacattttcaacaaattgaaatcatcgatc |
796 |
Q |
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| T |
31015542 |
gtacattttcaacaaattgaaatcatcgatc |
31015572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 451 - 566
Target Start/End: Original strand, 31015184 - 31015299
Alignment:
| Q |
451 |
tggtccaattgatcttagataagctctgctaccatattagaatttgagttcggccaaactcaacccatacaaaattgacttgtatggtgagaatcgtctc |
550 |
Q |
| |
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||||||||| ||| || |||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| | ||||| |
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| T |
31015184 |
tggtccaatggatattggataggctctgctaccacattagaatttgagttcagccaaaatcaacccatacaaaatcgacttgtatggtgagtactgtctc |
31015283 |
T |
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| Q |
551 |
cacttataaacacatt |
566 |
Q |
| |
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|||||||||||||||| |
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| T |
31015284 |
cacttataaacacatt |
31015299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 430
Target Start/End: Complemental strand, 14314810 - 14314747
Alignment:
| Q |
367 |
tcttaacacacaccc-ctcagcccaagaatggaaatctggagtgtgaccttagtggcctgatagc |
430 |
Q |
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| T |
14314810 |
tcttaacacacaccctctc-gcccaagactggacatctggagtgtgaccctagtggcctgatagc |
14314747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 43433707 - 43433741
Alignment:
| Q |
263 |
ggttgggcctaactcaacccctaaaaaaccaactt |
297 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |
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| T |
43433707 |
ggttgggcctaactcaacccctacaaaaccaactt |
43433741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 513
Target Start/End: Original strand, 49190137 - 49190206
Alignment:
| Q |
444 |
aagcaggtggtccaattgatcttagataagctctgctaccatattagaatttgagttcggccaaactcaa |
513 |
Q |
| |
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||||||||||||||| |||||| |||| |||||| |||||| |||||||||| ||| ||||||||||| |
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| T |
49190137 |
aagcaggtggtccaacggatcttggataggctctgataccatcttagaatttgggttgagccaaactcaa |
49190206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 534
Target Start/End: Complemental strand, 10485157 - 10485103
Alignment:
| Q |
480 |
taccatattagaatttgagttcggccaaactcaacccatacaaaattgacttgta |
534 |
Q |
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||||||||||||||||| ||| |||| ||||||| || ||||||| ||||||||| |
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| T |
10485157 |
taccatattagaatttgggttaggcctaactcaaaccctacaaaactgacttgta |
10485103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 524
Target Start/End: Original strand, 2249679 - 2249716
Alignment:
| Q |
487 |
ttagaatttgagttcggccaaactcaacccatacaaaa |
524 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||| |
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| T |
2249679 |
ttagaatttgagttgggcctaactcaacccatacaaaa |
2249716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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