View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_20 (Length: 358)
Name: NF20619_low_20
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 343
Target Start/End: Complemental strand, 25795601 - 25795259
Alignment:
| Q |
4 |
atactatgagcaacaccattcatttttctctcaagattcaaaaaccaactcatcaacacaaatattgtc----ggtagnnnnnnngttttgagcaaaaat |
99 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | | |||||||||||||| |
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| T |
25795601 |
atacaatgagcaacaccattcatttttctctgaagattcaaaaaccaactcatcaacaaaaatattgtctagtgttttttttttttttttgagcaaaaat |
25795502 |
T |
|
| Q |
100 |
attgtcgtagttatcaaaaacgatttttaagtccagttcgaaatttataaacgactctttctaacttacttttataacttataacttattgtttgcactc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25795501 |
attgtcgtagttatcaaaaacgatttttaagtccagttcaaaatttataaacgactctttctaacttacttttataacttataacttattgtttgcactc |
25795402 |
T |
|
| Q |
200 |
aacgtttgaacaactctattttnnnnnnnnngtttaaacaactctattttnnnnnnnngtttaaacaactcttatcttatctaacttattattttatttt |
299 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25795401 |
aacgtttgaacaactctatttt-aaaaaaaagtttaaacaactctattttaaaaaaaagtttaaacaactcttatcttatctaacttattattttatttt |
25795303 |
T |
|
| Q |
300 |
ttacaataaaacaaataaaacaagcttcatttaaatgatgaaat |
343 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
25795302 |
ttacaataaaacaaataaaacaagcctcatttaaatgttgaaat |
25795259 |
T |
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