View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_21 (Length: 355)
Name: NF20619_low_21
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 36341923 - 36342266
Alignment:
| Q |
1 |
ggaaacaaagaggaagcatgcgatattctcaattatatacaggttacaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatat |
100 |
Q |
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| T |
36341923 |
ggaaacaaagaggaagcatgtgatattctcaattatatacaggttacaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatat |
36342022 |
T |
|
| Q |
101 |
tctcaattcaaattcaaatattactaaccgaaaatctatagaaaaattgcatcagtgat-------gagcaattgaattctctaattgaaagttaaatat |
193 |
Q |
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| T |
36342023 |
tctcaattcaaattcaaatattgctaactgaaaatctatagaaaaactgcatcagtgatgactgatgagcaattgaattctctaattcaaagttaaatat |
36342122 |
T |
|
| Q |
194 |
tgttagacgaatatctgcacaataattgcagcaatcagttcactgatcttacacatattgatatatcaaggcatctcttccatcttcattagtgtttaga |
293 |
Q |
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| T |
36342123 |
tgttagatgaatatctgcacaataattgcagcaatcagttcactgatcttacacatattgatatatcaaggcatctcttccatcttcattagtgattaga |
36342222 |
T |
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| Q |
294 |
ctttaagaatatcaaggcaattcgtttgttcagggagctagatg |
337 |
Q |
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| T |
36342223 |
ctttaagaatatcaaggcaattcgtttgttcagggagctagatg |
36342266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 34 - 268
Target Start/End: Original strand, 39865270 - 39865504
Alignment:
| Q |
34 |
tatatacaggttacaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatattactaaccgaaa |
133 |
Q |
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| T |
39865270 |
tatatacaggttacaacaataacttggctgatcgcaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatatcgctaactgaaa |
39865369 |
T |
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| Q |
134 |
atctatagaaaaattgcatcagtgatgagcaattgaattctctaattgaaagttaaatattgttagacgaatatctgcacaataattgcagcaatcagtt |
233 |
Q |
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||||||| || || ||||||||| | ||||||||||| ||||||| |||| |||| ||||||| ||||||||||||||||||||||| |||||||| |
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| T |
39865370 |
atctatacaataactgcatcagtaaccggcaattgaattatctaattcaaagacaaattctgttagatgaatatctgcacaataattgcagaaatcagtt |
39865469 |
T |
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| Q |
234 |
cactgatcttacacatattgatatatcaaggcatc |
268 |
Q |
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| T |
39865470 |
cactgatcttacacatattgatatatcaaggcatc |
39865504 |
T |
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