View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_22 (Length: 352)
Name: NF20619_low_22
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_22 |
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| [»] scaffold1183 (1 HSPs) |
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Alignment Details
Target: scaffold1183 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold1183
Description:
Target: scaffold1183; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 2130 - 1799
Alignment:
| Q |
1 |
tttcctttgtaccttcttaaactttacaagttacaaatttagtttatacagggaccaaagtctgcatttttaatacatataaaattcaatcataataaga |
100 |
Q |
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| T |
2130 |
tttcctttgtacctttttaaactttacaagttacaaatttagtttatacagggaccaaagtctgcatttttaatacatataaaattcaatcataataaga |
2031 |
T |
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| Q |
101 |
aggttgtaaaatgcatataaagctttattttatctcatagctttaccctaccaagtgtttaaatgagcaacaatatgaaaaagtgtacaatattcaaag- |
199 |
Q |
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| T |
2030 |
aggttgtaaaatgcacataaagctgtattttatctcatagctttaccccaccatgtgtttaaatgagcataaataagaaaaagtgtacaatatttaaaga |
1931 |
T |
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| Q |
200 |
nnnnnnntataagcatgacctaaacttaacatgtttgttcttttctcttttttcatgtcacagttcttgcgttctaaagttaatttgtttatcaattaac |
299 |
Q |
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| T |
1930 |
aaaaaaatataagcatgac-----cttaacatgtttgttcttttctcttttttcatgtcacagttcttgcgttctaaagttaatttgtttatcaattaac |
1836 |
T |
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| Q |
300 |
tctaggatccctaaatctttgggtaaatgcacatttt |
336 |
Q |
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| T |
1835 |
tctaggatccctaaatctccgggtaaatgcacatttt |
1799 |
T |
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