View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20619_low_23 (Length: 321)
Name: NF20619_low_23
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 45568215 - 45567957
Alignment:
| Q |
13 |
gaagacagaggattgttagatacccttaatttagttttaatttgttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttcat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45568215 |
gaagacagaggattgttagatacccttaatttagttttaattagttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttcat |
45568116 |
T |
|
| Q |
113 |
tatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcagnnnnnnnnncctcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45568115 |
tatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcagtttttttttcctcg |
45568016 |
T |
|
| Q |
213 |
tgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45568015 |
tgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatat |
45567957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 79 - 305
Target Start/End: Original strand, 35817131 - 35817355
Alignment:
| Q |
79 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaat |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
35817131 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggatgatagtgttaatttaatcgatgagaaattatttgaaaagcaaat |
35817230 |
T |
|
| Q |
179 |
ggaccgctgagaagatgca-gnnnnnnnnncctcgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaa |
277 |
Q |
| |
|
||||| ||| ||||||||| | ||||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
35817231 |
ggaccactgggaagatgcaggtttttttttcctcgtgtcttaaatggtt-attaacaggtcttaaattgtctcaatggaccagttatctc--atctgaaa |
35817327 |
T |
|
| Q |
278 |
agggtagatgagaatttaaagaatattg |
305 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |
|
|
| T |
35817328 |
agggtagatgagaaattatagaatattg |
35817355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 91 - 301
Target Start/End: Complemental strand, 45093218 - 45093018
Alignment:
| Q |
91 |
gatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgaga |
190 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||| | |||||| ||||||||||||| |||||| ||||| |
|
|
| T |
45093218 |
gatacttgccacaatttttcactatccctatttgagtcttggatgatag-gttaatctaatcattgagaaataatttgaaaagcaactggaccattgaga |
45093120 |
T |
|
| Q |
191 |
agatgcagnnnnnnnnncctcgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaaagggtagatgaga |
290 |
Q |
| |
|
| ||||| |||||||| |||| ||||||||||||||||||||| || ||| |||| |||||||||| |||||||||||||||| |
|
|
| T |
45093119 |
aaatgca-agtttttttcctcgtgtattaaatggttaattaacaggtcttaa--------aatggaagagttctctcatatctcaaaagggtagatgaga |
45093029 |
T |
|
| Q |
291 |
atttaaagaat |
301 |
Q |
| |
|
||||||||||| |
|
|
| T |
45093028 |
atttaaagaat |
45093018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 35816823 - 35816864
Alignment:
| Q |
18 |
cagaggattgttagatacccttaatttagttttaatttgttt |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35816823 |
cagaggattgttagatacccttaatttagttttaattagttt |
35816864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 45093527 - 45093489
Alignment:
| Q |
21 |
aggattgttagatacccttaatttagttttaatttgttt |
59 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
45093527 |
aggattgttagatacccttcatttagttttaattagttt |
45093489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 45177311 - 45177357
Alignment:
| Q |
13 |
gaagacagaggattgttagatacccttaatttagttttaatttgttt |
59 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
45177311 |
gaaggcagaggattgttagatgcccttaatttacttttaattagttt |
45177357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University