View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20619_low_25 (Length: 320)
Name: NF20619_low_25
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_25 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 26 - 304
Target Start/End: Complemental strand, 17961 - 17683
Alignment:
| Q |
26 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
125 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17961 |
tacattaccaattaaattacaaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgtttacagtgaaacttgaatcaaac |
17862 |
T |
|
| Q |
126 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17861 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
17762 |
T |
|
| Q |
226 |
acgttaaattaaataaaagaatgacaccgggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17761 |
acgttaaattaaataaaagaatgacaccgggaggttggttaatcaatgttaaggcgcttcatcattaggtcaagaatac |
17683 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 22286930 - 22286703
Alignment:
| Q |
26 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22286930 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
22286831 |
T |
|
| Q |
126 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22286830 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
22286731 |
T |
|
| Q |
226 |
acgtt-aaattaaataaaagaatgacac |
252 |
Q |
| |
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||||| |||||||||||||||| ||||| |
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|
| T |
22286730 |
acgttaaaattaaataaaagaaagacac |
22286703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 22286637 - 22286587
Alignment:
| Q |
254 |
gggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatac |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22286637 |
gggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatac |
22286587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 13923879 - 13923653
Alignment:
| Q |
26 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
125 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13923879 |
tacattaccaattaaattacgaacctacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
13923780 |
T |
|
| Q |
126 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13923779 |
ttatacagaaataaaagagtactttgttaaaagtgcattattattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
13923680 |
T |
|
| Q |
226 |
acgttaaattaaataaaagaatgacac |
252 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
13923679 |
acgttaaattaaataaaagaaagacac |
13923653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 13923582 - 13923529
Alignment:
| Q |
250 |
caccgggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatac |
304 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
13923582 |
caccgggaggttggtta-tcaatgttaaggcgctacaccattaggtcaagaatac |
13923529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 2195783 - 2195557
Alignment:
| Q |
26 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
125 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2195783 |
tacattaccaattaaattacgaacctacacacatagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
2195684 |
T |
|
| Q |
126 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2195683 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
2195584 |
T |
|
| Q |
226 |
acgttaaattaaataaaagaatgacac |
252 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
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| T |
2195583 |
acgttaaattaaataaaagaaagacac |
2195557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 26 - 252
Target Start/End: Original strand, 24017908 - 24018133
Alignment:
| Q |
26 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
24017908 |
tacattaccaattaaattacgaacccacacacatagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttaaaccaaa- |
24018006 |
T |
|
| Q |
126 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
225 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24018007 |
ttatatagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
24018106 |
T |
|
| Q |
226 |
acgttaaattaaataaaagaatgacac |
252 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
24018107 |
acgttaaattaaataaaagaaagacac |
24018133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 24018195 - 24018249
Alignment:
| Q |
250 |
caccgggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatac |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24018195 |
caccgggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatac |
24018249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 2195495 - 2195441
Alignment:
| Q |
250 |
caccgggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatac |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2195495 |
caccgggaggttggttaatcaatgttaaggcgctgcaccattaggtcaagaatac |
2195441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 26 - 246
Target Start/End: Original strand, 15745216 - 15745436
Alignment:
| Q |
26 |
tacattaccaattaaattacgaacccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
125 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15745216 |
tacattaccaattaaattacgaacctacacacagagatagataggtaacatcgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaac |
15745315 |
T |
|
| Q |
126 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15745316 |
ttatacagaaataaaagagtactttgttaaaagtgcattactattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtag |
15745415 |
T |
|
| Q |
226 |
acgttaaattaaataaaagaa |
246 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
15745416 |
atgttaaattaaataaaagaa |
15745436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 15745517 - 15745565
Alignment:
| Q |
255 |
ggaggttggttaatcaatgttaaggcgctgcatcattaggtcaagaatac |
304 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15745517 |
ggaggttggtta-tcaatgttaaggcgctgcatcattaggtcaagaatac |
15745565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 167 - 301
Target Start/End: Original strand, 9867388 - 9867522
Alignment:
| Q |
167 |
tattacaactctcgcaagagcattttcaaattgaaaccaacaaaacagttttagagtagacgttaaattaaataaaagaatgacaccgggaggttggtta |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9867388 |
tattacaactctcgcaagagcattttcaaattgaaagcaacaaaacagttttagagtagacgttaaattaaataaaagaatgacaccgggaggttggtta |
9867487 |
T |
|
| Q |
267 |
atcaatgttaaggcgctgcatcattaggtcaagaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9867488 |
atcaatgttaaggcgctgcatcattaggtcaagaa |
9867522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 9867297 - 9867387
Alignment:
| Q |
49 |
cccacacacagagatagataggtaacattgtaattaatattacaaaagcattgttcacagtgaaacttgaatcaaacttatacagaaataa |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9867297 |
cccacacacagagatagataggtaacattgtaaataatattacaaaagcattgttcacagtgaaacttgaatcaaacttataaagaaataa |
9867387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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