View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_27 (Length: 312)
Name: NF20619_low_27
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 8358327 - 8358588
Alignment:
| Q |
17 |
aatttagtgatcaagagtctagctttttggatgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgt |
116 |
Q |
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| T |
8358327 |
aatttagtgatcaagagtcaagatttttggatgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgt |
8358426 |
T |
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| Q |
117 |
tctgcaacaaattacagagagatcacaacatta-----attatattatattaatttagaaaagaaaatatgagagacatattttaaactcaattatattg |
211 |
Q |
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| T |
8358427 |
tctgcaacaaattacagagagatcacaacattaattatattatattatattaatttagaaaagaaaatatgagagacatattttaaactcaattatattg |
8358526 |
T |
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| Q |
212 |
cttacgagtaatattatagaggaaataaataattcacgggcgtgattttcacacgttgcttg |
273 |
Q |
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| T |
8358527 |
cttacaagtaatattatagaggaaataaataattcacggacgtgattttcacacgttgcttg |
8358588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 28593235 - 28593124
Alignment:
| Q |
25 |
gatcaagagtctagctttttggatgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgttctgcaac |
124 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| | || |||||||||||||||||| |||||| |
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| T |
28593235 |
gatcaagagtctagctttttggatcagttggaagagcttgaagaacatgtttacttgtgctttcttaccatcaataaatctaggagacttgttatgcaac |
28593136 |
T |
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| Q |
125 |
aaattacagaga |
136 |
Q |
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| T |
28593135 |
aaattacagaga |
28593124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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