View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20619_low_28 (Length: 307)

Name: NF20619_low_28
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20619_low_28
NF20619_low_28
[»] chr1 (13 HSPs)
chr1 (76-262)||(10449438-10449621)
chr1 (84-160)||(6539648-6539725)
chr1 (84-160)||(9379810-9379887)
chr1 (84-160)||(9884833-9884910)
chr1 (84-255)||(44938792-44938960)
chr1 (84-254)||(44801750-44801918)
chr1 (84-161)||(718983-719061)
chr1 (194-236)||(28810060-28810102)
chr1 (118-168)||(49515348-49515398)
chr1 (89-149)||(9884941-9885001)
chr1 (84-117)||(28739437-28739470)
chr1 (89-149)||(49200058-49200119)
chr1 (189-225)||(44291143-44291179)
[»] chr5 (13 HSPs)
chr5 (109-253)||(12605573-12605714)
chr5 (84-160)||(1839963-1840040)
chr5 (84-160)||(29385374-29385451)
chr5 (84-156)||(19417437-19417510)
chr5 (85-149)||(7137744-7137809)
chr5 (119-171)||(42772043-42772095)
chr5 (218-253)||(36568836-36568871)
chr5 (89-149)||(4376347-4376408)
chr5 (199-240)||(5215675-5215716)
chr5 (189-226)||(5396365-5396402)
chr5 (84-168)||(7137633-7137718)
chr5 (84-171)||(4376421-4376509)
chr5 (189-225)||(34394692-34394728)
[»] scaffold0110 (1 HSPs)
scaffold0110 (184-252)||(26500-26568)
[»] chr7 (6 HSPs)
chr7 (84-166)||(24532777-24532859)
chr7 (119-160)||(25099338-25099379)
chr7 (184-240)||(32315719-32315775)
chr7 (84-117)||(7211861-7211894)
chr7 (84-117)||(17272700-17272733)
chr7 (195-240)||(46282880-46282925)
[»] chr2 (8 HSPs)
chr2 (88-168)||(5913521-5913601)
chr2 (84-160)||(39819055-39819132)
chr2 (85-118)||(5095752-5095785)
chr2 (84-117)||(7755337-7755370)
chr2 (195-240)||(7755348-7755393)
chr2 (215-255)||(12918662-12918702)
chr2 (189-225)||(20443264-20443300)
chr2 (215-255)||(39819192-39819232)
[»] chr3 (17 HSPs)
chr3 (84-166)||(48342209-48342291)
chr3 (84-240)||(32385370-32385523)
chr3 (88-160)||(20286900-20286973)
chr3 (85-240)||(29081592-29081745)
chr3 (184-253)||(48342786-48342855)
chr3 (88-168)||(25786919-25786999)
chr3 (189-240)||(28309087-28309138)
chr3 (190-240)||(45046777-45046828)
chr3 (84-117)||(29081723-29081756)
chr3 (184-240)||(36738351-36738407)
chr3 (84-134)||(49159493-49159544)
chr3 (84-160)||(22893988-22894056)
chr3 (123-161)||(36738293-36738331)
chr3 (84-117)||(11512388-11512421)
chr3 (119-159)||(16205737-16205777)
chr3 (193-225)||(17547054-17547086)
chr3 (194-234)||(36738279-36738319)
[»] chr6 (8 HSPs)
chr6 (189-254)||(16193824-16193889)
chr6 (119-168)||(369500-369549)
chr6 (195-240)||(2980796-2980841)
chr6 (194-253)||(369519-369578)
chr6 (85-168)||(28581813-28581895)
chr6 (84-158)||(2913919-2913996)
chr6 (189-225)||(15057110-15057146)
chr6 (189-225)||(24360488-24360524)
[»] chr4 (17 HSPs)
chr4 (88-171)||(32008314-32008398)
chr4 (84-160)||(31846880-31846957)
chr4 (84-161)||(32224277-32224354)
chr4 (86-167)||(53261171-53261253)
chr4 (84-158)||(33380704-33380779)
chr4 (184-240)||(30023635-30023691)
chr4 (217-252)||(2254663-2254698)
chr4 (190-249)||(33380606-33380665)
chr4 (200-246)||(30023489-30023535)
chr4 (218-256)||(31012259-31012297)
chr4 (118-171)||(24425301-24425354)
chr4 (84-117)||(30023484-30023517)
chr4 (184-225)||(48716963-48717004)
chr4 (199-239)||(38324937-38324977)
chr4 (189-225)||(41306645-41306681)
chr4 (193-249)||(53261093-53261149)
chr4 (119-167)||(54223581-54223629)
[»] scaffold0343 (1 HSPs)
scaffold0343 (84-168)||(12288-12370)
[»] scaffold1315 (1 HSPs)
scaffold1315 (184-240)||(1825-1881)
[»] scaffold1293 (1 HSPs)
scaffold1293 (184-240)||(190-246)
[»] chr8 (5 HSPs)
chr8 (109-171)||(7931602-7931664)
chr8 (110-240)||(33763470-33763597)
chr8 (84-225)||(31470737-31470875)
chr8 (91-149)||(32857072-32857131)
chr8 (93-149)||(31470844-31470901)


Alignment Details
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 76 - 262
Target Start/End: Complemental strand, 10449621 - 10449438
Alignment:
Q  76 aaaattgtgtagcacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataannnn 175  Q
    ||||||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||| |||||||||| | ||||||||||||| |||||| ||        
T  10449621 aaaattgggtagcacttggatgacattgtggttggtgacattgtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaa---t 10449525  T
Q  176 nnnnnnnngtttctttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcacataagtattatccgttaaaatt 262  Q
            |||||||||||||||||||| ||| ||||||  ||||||||| ||||||||||||||  ||||||||||| | ||||||    
T  10449524 atttttttgtttctttgtacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagtattatccctaaaaatt 10449438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 6539725 - 6539648
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatta-tgacattggtcaaccagaatgtcacaagtgtctttcttcttt 160  Q
    ||||||||||||||| |||||||||| ||| |||  |||||||||||||||| ||||||||| ||| |||||||||||    
T  6539725 gtagcacttgggtgacattgtggttgatgatattggtgacattggtcaaccacaatgtcacatgtgactttcttcttt 6539648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 9379810 - 9379887
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgtctttcttcttt 160  Q
    |||||||||||||||||| |||||||||||||||  ||| ||||| |||||| ||||||||| ||| |||||||||||    
T  9379810 gtagcacttgggtgatatcgtggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttcttt 9379887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 9884833 - 9884910
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatta-tgacattggtcaaccagaatgtcacaagtgtctttcttcttt 160  Q
    ||||||||| ||||| || |||||||||||||||  |||||||||||||||| ||||||||| ||| |||||||||||    
T  9884833 gtagcactttggtgacatagtggttggtgacattggtgacattggtcaaccacaatgtcacatgtggctttcttcttt 9884910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 255
Target Start/End: Complemental strand, 44938960 - 44938792
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatta-tgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataannnnnnnnnnn 182  Q
    ||||||||||||||| |||||| || ||||||||| ||||||||  |||||| ||||  ||||||| |||||||||||| |||||| ||               
T  44938960 gtagcacttgggtgacattgtgattagtgacattagtgacattgaacaaccacaatggtacaagtggctttcttctttctctttcacaaagttttttaa- 44938862  T
Q  183 ngtttctttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcacataagtattatccgt 255  Q
       || ||||||||||||||| ||| ||||||  ||||||||||||||||||||||||  |||| ||||||||    
T  44938861 ---ttttttgtacacttgtgacattctggttggtcaatgtcactaaccacaatgtcacccaagtgttatccgt 44938792  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 254
Target Start/End: Complemental strand, 44801918 - 44801750
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataannnnnnnnnnnn 183  Q
    ||||||||||| ||| |||||||||||||||||| | || |||  |||||| ||| |||||| ||||||||||||||| |||||| ||                
T  44801918 gtagcacttggatgacattgtggttggtgacattgt-acgttgaccaaccataatatcacaaatgtctttcttctttctctttcacaa--tatttttttt 44801822  T
Q  184 gtttctttgtacac-ttgtgatattatggttgaccaatgtcactaaccacaatgtcacataagtattatccg 254  Q
    |||| ||||||||| |||||| ||| |||||| |||||||||  ||||||||| |||| |||||||||||||    
T  44801821 gtttttttgtacactttgtgacattgtggttggccaatgtcatcaaccacaatatcacctaagtattatccg 44801750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 718983 - 719061
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgtctttcttctttc 161  Q
    |||||||||| |||| ||||||||||||||||||   | |||||| |||||| ||||||||||||| |||| |||||||    
T  718983 gtagcacttgagtgacattgtggttggtgacattggcggcattggacaaccacaatgtcacaagtggcttttttctttc 719061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 28810060 - 28810102
Alignment:
Q  194 acacttgtgatattatggttgaccaatgtcactaaccacaatg 236  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||    
T  28810060 acacttgtgacattgtggttgaccaatgtcaccaaccacaatg 28810102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 49515398 - 49515348
Alignment:
Q  118 atgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttca 168  Q
    ||||||||||||||||| ||||||| ||||| ||||||||| || ||||||    
T  49515398 atgacattggtcaaccataatgtcataagtggctttcttctatctctttca 49515348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 9885001 - 9884941
Alignment:
Q  89 acttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgt 149  Q
    |||||||||||||||||||||||||||||  |||||||  ||||||| ||||| ||||||||    
T  9885001 acttgggtgatattgtggttggtgacattcgtgacatt-atcaaccacaatgttacaagtgt 9884941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 28739470 - 28739437
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt 117  Q
    ||||||||||||||| ||||||||||||||||||    
T  28739470 gtagcacttgggtgacattgtggttggtgacatt 28739437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 49200119 - 49200058
Alignment:
Q  89 acttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgt 149  Q
    |||| ||||| |||||||||||||| ||| |||||||||  |||||| ||||||||||||||    
T  49200119 acttaggtgacattgtggttggtgatattgatgacattgaccaaccacaatgtcacaagtgt 49200058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 44291143 - 44291179
Alignment:
Q  189 tttgtacacttgtgatattatggttgaccaatgtcac 225  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  44291143 tttgtacacttgtgacattgtggttgaccaatgtcac 44291179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 109 - 253
Target Start/End: Original strand, 12605573 - 12605714
Alignment:
Q  109 ggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataannnnnnnnnnnngtttctttgtacacttgtgatatta 208  Q
    ||||||||| |||||||| ||||||| ||||||||| |||||||||||||||| |||||| |             |||||||||||||| ||||| |||     
T  12605573 ggtgacattgtgacattgatcaaccataatgtcacatgtgtctttcttctttcactttcaca---gtacatttttgtttctttgtacacgtgtgacattg 12605669  T
Q  209 tggttgaccaatgtcactaaccacaatgtcacataagtattatcc 253  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  12605670 tggttgaccaatgtcaccaaccacaatgtcacttaagtattatcc 12605714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 1839963 - 1840040
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgtctttcttcttt 160  Q
    |||||| |||||||| |||||||||||||||||| |||||||||| |||||| ||||||||| ||| |||||||||||    
T  1839963 gtagcaattgggtgacattgtggttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttcttt 1840040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 29385451 - 29385374
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgtctttcttcttt 160  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| |||||| ||||||||| ||| |||||||||||    
T  29385451 gtagcacttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttcttt 29385374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 19417437 - 19417510
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgtctttctt 156  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||||||| | ||||||||| ||| |||||||    
T  19417437 gtagcacttgggtgacattgtggttggtgacattggtgacattggtcaactacaatgtcacatgtgactttctt 19417510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 7137809 - 7137744
Alignment:
Q  85 tagcacttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgt 149  Q
    |||||||||||||| ||| | |||||||||||| | ||||||||||||||| ||||||||||||||    
T  7137809 tagcacttgggtgacattatagttggtgacattgacgacattggtcaaccacaatgtcacaagtgt 7137744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 42772095 - 42772043
Alignment:
Q  119 tgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataa 171  Q
    ||||||||  |||||| ||||||||||||||||||||||||||  ||||||||    
T  42772095 tgacattgaccaaccacaatgtcacaagtgtctttcttctttctttttcataa 42772043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 36568836 - 36568871
Alignment:
Q  218 aatgtcactaaccacaatgtcacataagtattatcc 253  Q
    |||||||| |||||||||||||||||||||||||||    
T  36568836 aatgtcaccaaccacaatgtcacataagtattatcc 36568871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 4376347 - 4376408
Alignment:
Q  89 acttgggtgatattgtggttggtgacatta-tgacattggtcaaccagaatgtcacaagtgt 149  Q
    ||||| |||| |||||||||||| |||||  || ||||||||||||| ||||||||||||||    
T  4376347 acttgagtgacattgtggttggtaacattcgtgccattggtcaaccacaatgtcacaagtgt 4376408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 5215675 - 5215716
Alignment:
Q  199 tgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  5215675 tgtgatattgtggttgaccaatgtcatcaaccacaatgtcac 5215716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 5396365 - 5396402
Alignment:
Q  189 tttgtacacttgtgatattatggttgaccaatgtcact 226  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  5396365 tttgcacacttgtgatattgtggttgaccaatgtcact 5396402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 7137633 - 7137718
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatta-tgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttca 168  Q
    |||| |||||||||| ||||  |||||||| |||  ||||||||  |||||| ||||||||||||| |||||||| ||| ||||||    
T  7137633 gtagtacttgggtgacattgcagttggtgaaattggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttca 7137718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 4376509 - 4376421
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatta-tgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataa 171  Q
    |||||||||| |||| |||||||||| |||||||  ||||| ||  |||| | |||||||||| ||  ||||||||||| |||||||||    
T  4376509 gtagcacttgagtgacattgtggttgatgacattggtgacaatgaccaacaacaatgtcacaaatggttttcttctttctctttcataa 4376421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 34394728 - 34394692
Alignment:
Q  189 tttgtacacttgtgatattatggttgaccaatgtcac 225  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  34394728 tttgtacacttgtgacattgtggttgaccaatgtcac 34394692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 26568 - 26500
Alignment:
Q  184 gtttctttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcacataagtattatc 252  Q
    |||||||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||    
T  26568 gtttctttatacacttgtgatattgtgtttgaccaatgtcaccaaccacaatgtcacataagtattatc 26500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 24532859 - 24532777
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgcttt 166  Q
    ||||||||||||| | |||||||||||||||| | |||||||| ||||||| ||||||||||||||| |||||||||| ||||    
T  24532859 gtagcacttgggtaacattgtggttggtgacactgtgacattgatcaaccacaatgtcacaagtgtccttcttctttctcttt 24532777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 25099379 - 25099338
Alignment:
Q  119 tgacattggtcaaccagaatgtcacaagtgtctttcttcttt 160  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  25099379 tgactttggtcaaccacaatgtcacaagtgtctttcttcttt 25099338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 32315775 - 32315719
Alignment:
Q  184 gtttctttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
    |||| |||||||| |||||| ||| |||||| |||||||||| ||||||||||||||    
T  32315775 gtttttttgtacaattgtgacattgtggttggccaatgtcaccaaccacaatgtcac 32315719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 7211861 - 7211894
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt 117  Q
    ||||||||||||||| ||||||||||||||||||    
T  7211861 gtagcacttgggtgacattgtggttggtgacatt 7211894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 17272700 - 17272733
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt 117  Q
    ||||||||||||||| ||||||||||||||||||    
T  17272700 gtagcacttgggtgacattgtggttggtgacatt 17272733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 46282925 - 46282880
Alignment:
Q  195 cacttgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
    ||||||||||||| |||||| |||||||||| ||| ||||||||||    
T  46282925 cacttgtgatattgtggttggccaatgtcaccaactacaatgtcac 46282880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 5913521 - 5913601
Alignment:
Q  88 cacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttca 168  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||| ||| | |||| ||||||||||||||| ||||||    
T  5913521 cacttgggtgacattgtggttggtgacattgtgacattggccaaccacaatcttacaaatgtctttcttctttctctttca 5913601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 39819055 - 39819132
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgtctttcttcttt 160  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| |||||| ||||||||| ||| |||||||||||    
T  39819055 gtagcacttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttcttt 39819132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 5095752 - 5095785
Alignment:
Q  85 tagcacttgggtgatattgtggttggtgacatta 118  Q
    ||||||||||||||||||||||||||||||||||    
T  5095752 tagcacttgggtgatattgtggttggtgacatta 5095785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 7755337 - 7755370
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt 117  Q
    ||||||||||||||| ||||||||||||||||||    
T  7755337 gtagcacttgggtgacattgtggttggtgacatt 7755370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 7755393 - 7755348
Alignment:
Q  195 cacttgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
    ||||||||| ||| |||||| |||||||||| ||||||||||||||    
T  7755393 cacttgtgacattgtggttggccaatgtcaccaaccacaatgtcac 7755348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 12918662 - 12918702
Alignment:
Q  215 accaatgtcactaaccacaatgtcacataagtattatccgt 255  Q
    ||||||||||| ||||||||||||||  |||||||||||||    
T  12918662 accaatgtcaccaaccacaatgtcacccaagtattatccgt 12918702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 20443300 - 20443264
Alignment:
Q  189 tttgtacacttgtgatattatggttgaccaatgtcac 225  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  20443300 tttgtacacttgtgatattgtggttgatcaatgtcac 20443264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 39819192 - 39819232
Alignment:
Q  215 accaatgtcactaaccacaatgtcacataagtattatccgt 255  Q
    ||||||||||| ||||||||||||||  |||||||||||||    
T  39819192 accaatgtcaccaaccacaatgtcacccaagtattatccgt 39819232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 48342209 - 48342291
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgcttt 166  Q
    ||||||||||||||| |||||||||||||||||| ||||||| | |||||| |||| |||| |||||||||||| ||| ||||    
T  48342209 gtagcacttgggtgacattgtggttggtgacattgtgacattagccaaccacaatgccacatgtgtctttcttcattctcttt 48342291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 240
Target Start/End: Complemental strand, 32385523 - 32385370
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataannnnnnnnnnnn 183  Q
    ||||||||| |||||||||||||||| ||| ||| ||| ||||| |||||| ||||| | |||||| ||||||||||| |||||| ||                
T  32385523 gtagcacttaggtgatattgtggttgatgatattgtgatattggccaaccacaatgttaaaagtgtttttcttctttctctttcacaa---tatttattt 32385427  T
Q  184 gtttctttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
    |||| ||||||||||||| | ||| ||||||||||||||||| || |||||||||||    
T  32385426 gtttatttgtacacttgtcacattgtggttgaccaatgtcaccaatcacaatgtcac 32385370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 20286900 - 20286973
Alignment:
Q  88 cacttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgtctttcttcttt 160  Q
    ||||||||||| ||| |||||||||||||| |||||||||| |||||| ||||||||| ||| |||||||||||    
T  20286900 cacttgggtgacattatggttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttcttt 20286973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 29081592 - 29081745
Alignment:
Q  85 tagcacttgggtgatattgtggttggtgacatta-tgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataannnnnnnnnnnn 183  Q
    ||||| |||||||| |||||||||||||||||   ||||||||  |||||| ||||||||||||  ||||||||||||  ||||||||                
T  29081592 tagcatttgggtgacattgtggttggtgacatcggtgacattgaccaaccacaatgtcacaagtagctttcttctttctttttcataaagtttttttt-- 29081689  T
Q  184 gtttctttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
     ||| ||||||||||||||| ||| ||||||||||||||||| ||||||||| ||||    
T  29081690 -tttttttgtacacttgtgacattgtggttgaccaatgtcaccaaccacaatatcac 29081745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 48342855 - 48342786
Alignment:
Q  184 gtttctttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcacataagtattatcc 253  Q
    ||||||||||||| |||||| ||| ||||||||||||||| | ||||| ||||||||  |||||||||||    
T  48342855 gtttctttgtacatttgtgacattgtggttgaccaatgtcgccaaccataatgtcacccaagtattatcc 48342786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 25786919 - 25786999
Alignment:
Q  88 cacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttca 168  Q
    ||||| ||||| |||||| | | ||| |||||||||||| |||| || ||||||||||||||||||| |||||| ||||||    
T  25786919 cactttggtgacattgtgatcgatgatattatgacattgatcaatcataatgtcacaagtgtctttcatctttctctttca 25786999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 28309138 - 28309087
Alignment:
Q  189 tttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
    ||||||||||||||||||| ||||||| ||||||||  ||||||||||||||    
T  28309138 tttgtacacttgtgatattgtggttgatcaatgtcatcaaccacaatgtcac 28309087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 45046777 - 45046828
Alignment:
Q  190 ttgtacacttgtgatattatgg-ttgaccaatgtcactaaccacaatgtcac 240  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||||||    
T  45046777 ttgtacacttgtgatattatggtttgatcaatgtcattaaccacaatgtcac 45046828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 29081756 - 29081723
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt 117  Q
    ||||||||||||||||||||||||||||||||||    
T  29081756 gtagcacttgggtgatattgtggttggtgacatt 29081723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 36738351 - 36738407
Alignment:
Q  184 gtttctttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
    |||| ||| ||||||| ||||||| | ||||||||||||||| ||||||||||||||    
T  36738351 gtttatttatacacttatgatattgtagttgaccaatgtcaccaaccacaatgtcac 36738407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 49159544 - 49159493
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt-atgacattggtcaacca 134  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| ||||||    
T  49159544 gtagcacttgggtgacattgtggttggtgacattggtgacattggccaacca 49159493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 22894056 - 22893988
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttcttt 160  Q
    ||||||||||||||| |||||||||||||||||  ||||      |||||| ||||||||||||| |||||||||||    
T  22894056 gtagcacttgggtgacattgtggttggtgacat--tgac------caaccacaatgtcacaagtgactttcttcttt 22893988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 36738293 - 36738331
Alignment:
Q  123 attggtcaaccagaatgtcacaagtgtctttcttctttc 161  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  36738293 attggtcaaccacaatatcacaagtgtctttcttctttc 36738331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 11512388 - 11512421
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt 117  Q
    ||||||||||||||| ||||||||||||||||||    
T  11512388 gtagcacttgggtgacattgtggttggtgacatt 11512421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 16205737 - 16205777
Alignment:
Q  119 tgacattggtcaaccagaatgtcacaagtgtctttcttctt 159  Q
    |||||||| ||||||| ||||||||||||| ||||||||||    
T  16205737 tgacattgatcaaccacaatgtcacaagtggctttcttctt 16205777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 17547054 - 17547086
Alignment:
Q  193 tacacttgtgatattatggttgaccaatgtcac 225  Q
    ||||||||||| |||||||||||||||||||||    
T  17547054 tacacttgtgacattatggttgaccaatgtcac 17547086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 36738319 - 36738279
Alignment:
Q  194 acacttgtgatattatggttgaccaatgtcactaaccacaa 234  Q
    |||||||||||||| |||||||||||| |||| ||||||||    
T  36738319 acacttgtgatattgtggttgaccaatatcaccaaccacaa 36738279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 16193824 - 16193889
Alignment:
Q  189 tttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcacataagtattatccg 254  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||  ||||||||||||    
T  16193824 tttgtacacttgtgacattgtggttgaccaatgtcaccaaccacaatgtcacccaagtattatccg 16193889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 369549 - 369500
Alignment:
Q  119 tgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttca 168  Q
    ||||||||  |||||| |||||||||||||||||||||||||| ||||||    
T  369549 tgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttca 369500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 2980796 - 2980841
Alignment:
Q  195 cacttgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||    
T  2980796 cacttgtgacattatggttgaccaatttcaccaaccacaatgtcac 2980841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 369519 - 369578
Alignment:
Q  194 acacttgtgatattatggttgaccaatgtcactaaccacaatgtcacataagtattatcc 253  Q
    |||||||||| ||| ||||||  ||||||||| ||||||||||||||  |||||||||||    
T  369519 acacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcactcaagtattatcc 369578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 28581895 - 28581813
Alignment:
Q  85 tagcacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttca 168  Q
    ||||||||| ||||||| ||||||| ||||||| ||| ||||  ||||   ||| |||||||||||||||||||||| ||||||    
T  28581895 tagcacttgagtgatat-gtggttgatgacattgtgatattgaccaacatcaatatcacaagtgtctttcttctttctctttca 28581813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 2913996 - 2913919
Alignment:
Q  84 gtagcacttgggtgata--ttgtggttggtgacatta-tgacattggtcaaccagaatgtcacaagtgtctttcttct 158  Q
    ||||||||||||||| |  ||||||||||||| |||  |||| ||| ||||||| | |||||||||||||||||||||    
T  2913996 gtagcacttgggtgacacattgtggttggtgatattggtgacgttgatcaaccacagtgtcacaagtgtctttcttct 2913919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 15057110 - 15057146
Alignment:
Q  189 tttgtacacttgtgatattatggttgaccaatgtcac 225  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  15057110 tttgtacacttgtgatattttggttggccaatgtcac 15057146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 24360488 - 24360524
Alignment:
Q  189 tttgtacacttgtgatattatggttgaccaatgtcac 225  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  24360488 tttgtacacttgtgatattgtggttgatcaatgtcac 24360524  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 32008398 - 32008314
Alignment:
Q  88 cacttgggtgatattgtggttggtgacatta-tgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataa 171  Q
    ||||||||||| ||||||||||||||||||| ||| ||||  |||||| ||||| |||||||||||||||||||| || ||||||    
T  32008398 cacttgggtgacattgtggttggtgacattagtgatattgaccaaccaaaatgttacaagtgtctttcttctttctctctcataa 32008314  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 31846957 - 31846880
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgtctttcttcttt 160  Q
    ||||||||||||||| ||||||||||||||||||  ||| ||||| |||||| ||||||||| ||| |||||||||||    
T  31846957 gtagcacttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttcttt 31846880  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 32224277 - 32224354
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttc 161  Q
    |||| ||||| |||| |||||||||||||| ||| |||||||| ||||| | |||||||||||| |||||||||||||    
T  32224277 gtagaacttgcgtgacattgtggttggtgatattgtgacattgatcaactacaatgtcacaagtatctttcttctttc 32224354  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 53261253 - 53261171
Alignment:
Q  86 agcacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtc-tttcttctttcgctttc 167  Q
    ||||||||||||| |||||||||||||||||| ||| ||||| |||||| ||  ||||||||| | ||||||||||| |||||    
T  53261253 agcacttgggtgaaattgtggttggtgacattgtgatattggccaaccataacatcacaagtggcttttcttctttctctttc 53261171  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 33380779 - 33380704
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgaca-ttatgacattggtcaaccagaatgtcacaagtgtctttcttct 158  Q
    ||||||||||| ||| |||||||||||||| | || ||||||| |||||||| ||||||| ||||| |||||||||    
T  33380779 gtagcacttggatgacattgtggttggtgatatttgtgacatttgtcaaccataatgtcataagtggctttcttct 33380704  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 30023635 - 30023691
Alignment:
Q  184 gtttctttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
    |||| ||||||||||||||| ||| ||||||  ||||||||| ||||||||||||||    
T  30023635 gtttttttgtacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcac 30023691  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 2254663 - 2254698
Alignment:
Q  217 caatgtcactaaccacaatgtcacataagtattatc 252  Q
    ||||||||| ||||||||||||||||||||||||||    
T  2254663 caatgtcacgaaccacaatgtcacataagtattatc 2254698  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 33380665 - 33380606
Alignment:
Q  190 ttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcacataagtatt 249  Q
    |||||||||||| | ||| |||||||||||| |||| |||||||||||||  ||||||||    
T  33380665 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcatctaagtatt 33380606  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 30023535 - 30023489
Alignment:
Q  200 gtgatattatggttgaccaatgtcactaaccacaatgtcacataagt 246  Q
    |||| ||||||||||||||||||||| ||||||||| |||| |||||    
T  30023535 gtgacattatggttgaccaatgtcaccaaccacaatatcacctaagt 30023489  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 31012259 - 31012297
Alignment:
Q  218 aatgtcactaaccacaatgtcacataagtattatccgtt 256  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  31012259 aatgtcaccaaccacaatgtcacctaagtattatccgtt 31012297  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 24425354 - 24425301
Alignment:
Q  118 atgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataa 171  Q
    |||||||| |||||||| ||||| | ||||| |||||||||||| |||||||||    
T  24425354 atgacattagtcaaccataatgtaataagtgactttcttctttctctttcataa 24425301  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 30023484 - 30023517
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacatt 117  Q
    ||||||||| ||||||||||||||||||||||||    
T  30023484 gtagcacttaggtgatattgtggttggtgacatt 30023517  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 48717004 - 48716963
Alignment:
Q  184 gtttctttgtacacttgtgatattatggttgaccaatgtcac 225  Q
    |||| ||| ||| |||||||||||||||||||||||||||||    
T  48717004 gtttttttatacgcttgtgatattatggttgaccaatgtcac 48716963  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 38324937 - 38324977
Alignment:
Q  199 tgtgatattatggttgaccaatgtcactaaccacaatgtca 239  Q
    |||||||||||||||| ||||| |||| |||||||||||||    
T  38324937 tgtgatattatggttggccaatatcaccaaccacaatgtca 38324977  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 41306681 - 41306645
Alignment:
Q  189 tttgtacacttgtgatattatggttgaccaatgtcac 225  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  41306681 tttgtacacttgtgacattatggttgaccaatatcac 41306645  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 53261149 - 53261093
Alignment:
Q  193 tacacttgtgatattatggttgaccaatgtcactaaccacaatgtcacataagtatt 249  Q
    ||||| ||||| ||| ||||||  ||||||||| |||||||||||||| ||||||||    
T  53261149 tacacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcacctaagtatt 53261093  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 54223581 - 54223629
Alignment:
Q  119 tgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttc 167  Q
    ||||||||  |||||| |||||||||| ||||||||||||||| |||||    
T  54223581 tgacattgaccaaccacaatgtcacaaatgtctttcttctttctctttc 54223629  T

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Target: scaffold0343 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 12370 - 12288
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttca 168  Q
    ||||||||||||||| |||||||  | ||||||| ||||||||  |||||| ||||||||||||||| |||||||||| ||||||    
T  12370 gtagcacttgggtgacattgtgg--gctgacattgtgacattgaccaaccacaatgtcacaagtgtccttcttctttctctttca 12288  T

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Target: scaffold1315 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 1881 - 1825
Alignment:
Q  184 gtttctttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
    |||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  1881 gtttttttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcac 1825  T

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Target: scaffold1293 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 190 - 246
Alignment:
Q  184 gtttctttgtacacttgtgatattatggttgaccaatgtcactaaccacaatgtcac 240  Q
    |||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  190 gtttttttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcac 246  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 7931664 - 7931602
Alignment:
Q  109 ggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataa 171  Q
    ||||||||| |||||||||  ||||| |||||||||| ||||||||||||||| |||||||||    
T  7931664 ggtgacattgtgacattggcaaaccacaatgtcacaaatgtctttcttctttctctttcataa 7931602  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 33763597 - 33763470
Alignment:
Q  110 gtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataannnnnnnnnnnngtttctttgtacacttgtgatattat 209  Q
    |||||| | |||||||||||||| | ||| ||||||||| |||||||||||  |||||||||            |||||||| |||| |||| ||||| |    
T  33763597 gtgacactgtgacattggtcaactacaatatcacaagtgcctttcttctttttctttcataatattttttt---gtttctttatacatttgtaatattgt 33763501  T
Q  210 ggttgaccaatgtcactaaccacaatgtcac 240  Q
    |||||||||||||||| ||||||||||||||    
T  33763500 ggttgaccaatgtcaccaaccacaatgtcac 33763470  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 31470737 - 31470875
Alignment:
Q  84 gtagcacttgggtgatattgtggttggtgacattatgacattggtcaaccagaatgtcacaagtgtctttcttctttcgctttcataannnnnnnnnnnn 183  Q
    ||||| ||||||||| ||| |||||||| ||||| ||||||||  |||||| |||||||||||| || |||||||||  |||||| ||                
T  31470737 gtagcgcttgggtgacattatggttggtaacattgtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatattttttt--- 31470833  T
Q  184 gtttctttgtacacttgtgatattatggttgaccaatgtcac 225  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  31470834 gtttctttgtacacttgtgacattgtggttggccaatgtcac 31470875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 32857131 - 32857072
Alignment:
Q  91 ttgggtgatattgtggttggtgacatt-atgacattggtcaaccagaatgtcacaagtgt 149  Q
    ||||||||||||||||||| ||||||| ||||||| || |||||| ||||||||||||||    
T  32857131 ttgggtgatattgtggttgatgacattgatgacataggccaaccacaatgtcacaagtgt 32857072  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 31470901 - 31470844
Alignment:
Q  93 gggtgatattgtggttggtgacatta-tgacattggtcaaccagaatgtcacaagtgt 149  Q
    ||||||||||||||||||||  |||  ||||||||| |||||| ||||||||||||||    
T  31470901 gggtgatattgtggttggtggtattggtgacattggccaaccacaatgtcacaagtgt 31470844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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