View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_3 (Length: 732)
Name: NF20619_low_3
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 13763979 - 13764208
Alignment:
| Q |
1 |
taaaaaattaggaattgatatgaggaactatatatggtgtgaagattgcattggagagtatgtgtttgtgagatgagtagaacgctgctaaga------- |
93 |
Q |
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| T |
13763979 |
taaaaacttaggaattgatatgaggaacaatataccatgtgaagattgaatttgagagtatgtgtttgtgagacgagtagaacgctgctaagaaaaggag |
13764078 |
T |
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| Q |
94 |
---------tctaactctcattttacaccaataacatcaattgtagtgaacgtgtagcaaatggatgatgaagggaaatatgatctgtattgtagtctag |
184 |
Q |
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| T |
13764079 |
acatgacaggttaactctcattttacaccaataacctcaattgtaatgaacgtgtaccattgggatgatgaagggaaatgtgat-----ttgtagtccgg |
13764173 |
T |
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| Q |
185 |
caaatatcttcccttcaaacttattggtaaaacat |
219 |
Q |
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| T |
13764174 |
aaaatatcttcccttcaaacttatttgtaaaacat |
13764208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 222 - 411
Target Start/End: Original strand, 13764812 - 13765007
Alignment:
| Q |
222 |
ttatttacaaagtacttaatgaaa-tgggaagaaaggggtttacaagtgccaagtgg--gcataactacaaggttatatagggcaagaataaacatcgta |
318 |
Q |
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| T |
13764812 |
ttatttacaaagtactcagtgaaaatgggtagaaaggggtttgc----gccaagtggtggcatagctacaaggttatagagggcaagaataaacatctta |
13764907 |
T |
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| Q |
319 |
aaacaga-------cttaaatggtgtacctgtatttaggttcttgtgcagcttatgatgattgcattaaattaatgaagatcacagcagctttcaaaatc |
411 |
Q |
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| T |
13764908 |
aaacaaatattttacttaaatagtgtacctgtatttaggttcttgtacagcttatgatgattgcagtaaattaacgacgataacagcagctttcgaaatc |
13765007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 624 - 705
Target Start/End: Original strand, 13765180 - 13765259
Alignment:
| Q |
624 |
cattttaaattttttataatttgaagttatttcaagatatg-aaactaccttagcaagggtaggttgaactgccgatgaactt |
705 |
Q |
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| T |
13765180 |
cattttaaattttttataatttgaagttatttcaagatatgcaaactaccttagcaag---aggttgaactgctgatgaactt |
13765259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 55151146 - 55151084
Alignment:
| Q |
10 |
aggaattgatatgaggaactatatatggtgtgaagattgcattggagagtatg-tgtttgtga |
71 |
Q |
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| T |
55151146 |
aggaattgatatgaagaactatatatggtgtgaatattgaatttgagagaatgctgtttgtga |
55151084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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