View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_30 (Length: 296)
Name: NF20619_low_30
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 25 - 280
Target Start/End: Complemental strand, 26915273 - 26915018
Alignment:
| Q |
25 |
ctgatgattataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctaatttcatgttttggattttttattgctggatt |
124 |
Q |
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| T |
26915273 |
ctgatgatcataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctgatttcatgttttggattttttattgctggatt |
26915174 |
T |
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| Q |
125 |
gcccaaaggcgcgatgttaagatgaaaacttgttgttgaagagtctaattacaacctagcttttgccgtttctttgaatagttatattctgttttatgtt |
224 |
Q |
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| T |
26915173 |
gcccaaaggtgcgatgttaagatgaaaacttgttcctgaagagtctaattacaacctagcttttgccgtttcttcgaatagttatattctgttttatgtt |
26915074 |
T |
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| Q |
225 |
ccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaag |
280 |
Q |
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| T |
26915073 |
ccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaaagtttgaaag |
26915018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 51182999 - 51182785
Alignment:
| Q |
18 |
atgaatgctgatgattataggccagatattgttcatcaggttagctactgttttcattactttgacaatgagctaatttcatgttttggattttttattg |
117 |
Q |
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| T |
51182999 |
atgaatcctgatgattataggccagatattgttcatcaggttagccactgttttcattactttgacaatgag--------atgttttggattttttattg |
51182908 |
T |
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| Q |
118 |
ctggattgcccaaaggcgcgatgttaagatgaaaacttgttgttgaagagtctaattacaacctagcttttgccgtttctttgaatagttatattctgtt |
217 |
Q |
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| T |
51182907 |
ctggattgcccaaaggcgcgacgttgagatgaaaacttgttcttgaagagtctaattacaacctaac--------ttcctctgaatagttatattttgtt |
51182816 |
T |
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| Q |
218 |
ttatgttccattgtagttttcttagaaaagt |
248 |
Q |
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| T |
51182815 |
ttatgttccattgtagttttcttagaaaagt |
51182785 |
T |
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