View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20619_low_31 (Length: 284)
Name: NF20619_low_31
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 32065928 - 32066202
Alignment:
| Q |
1 |
ctcaccgacaccgaataatatggtaatccagtcaatnnnnnnntaatatagacaaataaagtgcttatctctcattatttaatacggcgtaaaggtcaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32065928 |
ctcaccgacatcgaataatatgataatccagtcaataaaaaaataatatagacaaataaagtacttatctctcattatttaatatggcgtaaaggtcaaa |
32066027 |
T |
|
| Q |
101 |
cgtcagatgagtaacactaaagtaaaatgtatttcgtccgaattcataacaaatacatttgactaactccttaagaaagtggacatatgtttgattactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
32066028 |
cgtcagatgagtaacactaaagtaaaatgtatttcgtccgaattcagaaaaaatacatttgactaactccttaagaaagtggacatatgtttgagtactt |
32066127 |
T |
|
| Q |
201 |
acaatcgtgcatgaataaatttgtttggaaggaggaaactcatgtgtcaccattgactcattgacacagaataat |
275 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32066128 |
acaatcgtacattaataaatttgtttggaaggagggaactcatgtgtcaccattgactcattggcacagaataat |
32066202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 32066440 - 32066715
Alignment:
| Q |
1 |
ctcaccgacaccgaataatatggtaatccagtcaatnnnnnnn-taatatagacaaataaagtgcttatctctcattatttaatacggcgtaaaggtcaa |
99 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32066440 |
ctcactgacaccgaataatgtggtaatccagtgaataaaaataataatatagacaaataaagtacttatctctcattatttaatacggcgtaaagttcaa |
32066539 |
T |
|
| Q |
100 |
acgtcagatgagtaacactaaagtaaaatgtatttcgtccgaattcataacaaatacatttgactaactccttaagaaagtggacatatgtttgattact |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32066540 |
acgtcagatgagtaacactaaagtaaaatgcatttcgtccgaattcagaacatatacatttgactaactccttaagaaagtggacatatgtttgattcct |
32066639 |
T |
|
| Q |
200 |
tacaatcgtgcatgaataaatttgtttggaaggaggaaactcatgtgtcaccattgactcattgacacagaataat |
275 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
32066640 |
tacaatcgtgcatgaataaatttggttggaaggagggaactcatgtctcaccattgactcagtgacaccgaataat |
32066715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 32065154 - 32065431
Alignment:
| Q |
1 |
ctcaccgacaccgaataatatggtaatccagtcaatnnnnnnntaatatagacaaataaagtgcttatctctcattatttaatacggcgtaaaggtcaaa |
100 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32065154 |
ctcactgacaccgaattatatggtaatccagtcaataaaaaa--aatacagacaaataacgtacttatctctcattatttaatacggcgtaaaggtcaaa |
32065251 |
T |
|
| Q |
101 |
cgtcagatgagtaacactaaa-----gtaaaatgtatttcgtccgaattcataacaaatacatttgactaactccttaagaaagtggacatatgtttgat |
195 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32065252 |
cgtcagatcagtaacactaaattaaagtaaaatgtatttcgtctgaattcagaacaaatacatttgactaactccttaagaaagtggacaaatgtttgat |
32065351 |
T |
|
| Q |
196 |
tacttacaatcgtgcatgaataaatttgtttggaaggaggaaactcatgtgtcaccattgactcattgacacagaataat |
275 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
32065352 |
tccttactatcgtgcatgaataaatttggttggaaggagggaactcatgtgtcaccattgactcaacgacaccgaataat |
32065431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 32065413 - 32065650
Alignment:
| Q |
1 |
ctcaccgacaccgaataatatggtaatccagtcaatnnnnnnntaatatagacaaataaagtgcttatctctcattatttaatacggcgtaaaggtcaaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| || | ||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32065413 |
ctcaacgacaccgaataatatggtaatccagtcaatataa----aaaacagacaaataaagt--ttatctctcattatttaatacgacgtaaaggtcaaa |
32065506 |
T |
|
| Q |
101 |
cgtcagatgagtaacactaaagtaaaatgtatttcgtccgaattcataacaaatacatttgactaactccttaagaaagtggacatatgtttgattactt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
32065507 |
cgtcagatgagttacactaaagtaaaatttatttggtccgaattcaaaacaaataaatttgactaactccttaagaaagtgggcatatgtttgattcctt |
32065606 |
T |
|
| Q |
201 |
acaatcgtgcatgaat-aaatttgtttggaaggaggaaactcat |
243 |
Q |
| |
|
|||||||||||||||| | ||||| |||||||||| ||||||| |
|
|
| T |
32065607 |
acaatcgtgcatgaatgatatttggttggaaggagataactcat |
32065650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 32072844 - 32073058
Alignment:
| Q |
1 |
ctcaccgacaccgaataatatggtaatccagtcaatnnnnnnntaatatagacaaataaagtgcttatctctcattatttaatacggcgtaaaggtcaaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32072844 |
ctcactgacaccgaataatatggtaatctagtcaataaaa----aatacagacaaataaagtacttatctcttattatttaatacggcgtaaaggtcaaa |
32072939 |
T |
|
| Q |
101 |
cgtcagatgagtaacactaaagtaaaatgtatttcgtccgaattcataacaaatacatttgactaactccttaagaaagtggacatatgtttgattactt |
200 |
Q |
| |
|
| |||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32072940 |
ctgcagatgagtaacactacagtaaaatgtatttggtccgaattcagatcaaatacatttgactaactccttaagaaagtggacatatgtttgattcttt |
32073039 |
T |
|
| Q |
201 |
acaatcgtgcatgaataaa |
219 |
Q |
| |
|
||| | ||||||||||||| |
|
|
| T |
32073040 |
acactagtgcatgaataaa |
32073058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 32066229 - 32066393
Alignment:
| Q |
50 |
agacaaataaagtgcttatctctcattatttaatacggcgtaaaggtcaaacgtcagatgagtaacactaaagtaaaatgtatttcgtccgaattcataa |
149 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
32066229 |
agacaaataaagt--ttatctctcattatttaatacggcgtaaaggtcaaacgtcatatgggtaacactaaagtaaaatgtatttggtccgaattcagat |
32066326 |
T |
|
| Q |
150 |
caaatacatttgactaactccttaagaaagtggacatatgtttgattacttacaatcgtgcatgaat |
216 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32066327 |
caaataaatttgactaactccttaagaaagtggacatatgtttgattccttacaatcgtgcatgaat |
32066393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 32065669 - 32065884
Alignment:
| Q |
1 |
ctcaccgacaccgaataatatggtaatccagtcaatnnnnnnntaatatagacaaataaagtgcttatctctcattatttaatacggcgtaaaggtcaaa |
100 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||||| |||| ||| ||||||||| ||||||||||||||||||||| || |||||||| ||| |
|
|
| T |
32065669 |
ctcaccgaaatcgaataatatggtaatccaatcaataaaaa---aatacagataaataaagtacttatctctcattatttaatatggtgtaaaggtaaaa |
32065765 |
T |
|
| Q |
101 |
cgtcagatgagtaacactaaagtaaaatgtatttcgtccgaattcataacaaatacatttgactaactccttaagaaagtggacatatgtttgattactt |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || ||||||| | |||||| |||||||||||||| |||||||||||||||| |||||||| ||| |
|
|
| T |
32065766 |
cgtcatgtgagtaacactaaagtaaaatgtatttggtatgaattcagatcaaataaatttgactaactccataagaaagtggacataagtttgattcctt |
32065865 |
T |
|
| Q |
201 |
acaatcgtgcatgaataaa |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
32065866 |
acaatcgtgcatgaataaa |
32065884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32073933 - 32074165
Alignment:
| Q |
1 |
ctcaccgacaccgaataatatggtaatccagtcaatnnnnnnntaatatagacaaataaagtgcttatctctcattatttaatacggcgtaaaggtcaaa |
100 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| |||| |||||||| ||| ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
32073933 |
ctcaccgacactaaataatatggtattccagtcaataaaaa---aatacagacaaatggagtacttatctctcattatttaatacggcataatggtcaaa |
32074029 |
T |
|
| Q |
101 |
cgtcagatgagtaacactaaagtaaaatgtatttcgtccgaattcataacaaatacat-ttgactaactccttaagaaagtggacatatgtttgattact |
199 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||||||||| | ||||||||| |||||||||||||| ||||||| |||||||||||| | || |
|
|
| T |
32074030 |
cgtcatatgagtaacactaaagtaaaatgtatgtggtccgaattcagatcaaatacatattgactaactccttgtgaaagtgaacatatgtttgactcct |
32074129 |
T |
|
| Q |
200 |
tacaatcgtgcatgaat-aaatttgtttggaaggag |
234 |
Q |
| |
|
|||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
32074130 |
tacattcgtgcatgaataaaatttggttggaaggag |
32074165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 32073673 - 32073883
Alignment:
| Q |
1 |
ctcaccgacaccgaataatatggtaatccagtcaatnnnnnnntaatatagacaaataaagtgcttatctctcattatttaatacggcgtaaaggtcaaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32073673 |
ctcaccgacaccgaataatctggtaatccattcaataaaa----aatacagacaaatgaagtacttatctctcattatttaatacggcgtaaaggtcaaa |
32073768 |
T |
|
| Q |
101 |
cgtcagatgagtaacactaaagtaaaatgtatttcgtccgaattcataacaaataca-tttgactaactccttaagaaagtggacatatgtttgattact |
199 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| | || ||| | | | |||||||| |||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
32073769 |
cgtcatatgagtaacacttatgtaaaatgtatgttgtttgaacttagatcaaatacattttgactaactccttatgaaagtggacatatgtttgattcct |
32073868 |
T |
|
| Q |
200 |
tacaatcgtgcatga |
214 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
32073869 |
tacactcgtgcatga |
32073883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 32066744 - 32066855
Alignment:
| Q |
52 |
acaaataaagtgcttatctctcattatttaatacggcgtaaaggtcaaacgtcagatgagtaacactaaagtaaaatgtatttcgtccgaattcataaca |
151 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | || |
|
|
| T |
32066744 |
acaaataaagt--ttatctctcattatttaatacggcgtaaagttcaaacgtcagatgagtaacactaaagtaaaatgtatttggtccgaattcagatca |
32066841 |
T |
|
| Q |
152 |
aatacatttgacta |
165 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32066842 |
tatacatttgacta |
32066855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 32065056 - 32065169
Alignment:
| Q |
165 |
aactccttaagaaagtggacatatgtttgattacttacaatcgtgcatgaat-aaatttgtttggaaggaggaaactca-----tgtgtcaccattgact |
258 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||||| ||||||| || |||||| |||||||||||||||| |
|
|
| T |
32065056 |
aactccttaagaaagtggatatatgtttgattctttacactcgtgcatgaataaaatttggttggaagaagagaactcacttcgtgtgtcaccattgact |
32065155 |
T |
|
| Q |
259 |
cattgacacagaat |
272 |
Q |
| |
|
|| |||||| |||| |
|
|
| T |
32065156 |
cactgacaccgaat |
32065169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 32052337 - 32052437
Alignment:
| Q |
65 |
ttatctctcattatttaatacggcgtaaaggtcaaacgtcagatgagtaacactaaa-gtaaaatgtatttcgtccgaattcataacaaatacatttgac |
163 |
Q |
| |
|
|||||||||||||||| ||| || |||||| ||||||| || ||||||||| ||| ||||||||||||| ||| |||| | | |||||||||||||| |
|
|
| T |
32052337 |
ttatctctcattatttgatagggtgtaaagaccaaacgttaggcgagtaacacaaaatgtaaaatgtatttggtctaaatttagatcaaatacatttgac |
32052436 |
T |
|
| Q |
164 |
t |
164 |
Q |
| |
|
| |
|
|
| T |
32052437 |
t |
32052437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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