View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_33 (Length: 275)
Name: NF20619_low_33
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21569787 - 21569863
Alignment:
| Q |
1 |
ttgatattttatattatggagaatccaattaatttgtgactaatgcaattcacatattgtattagaacttagaagac |
77 |
Q |
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| T |
21569787 |
ttgatattttatattgtggaaaatccaattaatttgtgactaatgcaattcacatattgtattagaacttagaagac |
21569863 |
T |
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Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 260
Target Start/End: Original strand, 21569905 - 21570049
Alignment:
| Q |
116 |
aatggttcacatattatattagttgannnnnnnatgaaattttgttatctaaggtcataaaa-atggtttattagaaagaattgcaccagatgannnnnn |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
21569905 |
aatggttcacatattatattagttgatttttt-atgaaattttgttatctaaggtcataaaaaatggtttattagaaagaattgcaacagatgatttttt |
21570003 |
T |
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| Q |
215 |
nnnnnnnnnnnaaatatataagcaaaataattgtaattaaggagag |
260 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
21570004 |
gtttagtttttaaatatataagcaaaataattgtaattaaggagag |
21570049 |
T |
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