View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_35 (Length: 272)
Name: NF20619_low_35
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 54791106 - 54790844
Alignment:
| Q |
1 |
ttctgtttgctgaacctttgcttactccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791106 |
ttctgtttgctgaacctttgcttactccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgag |
54791007 |
T |
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| Q |
101 |
tgtgccgtttaagttcttcactttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54791006 |
tgtgccgtttaagttcttcactttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactct |
54790907 |
T |
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| Q |
201 |
tcttcagagctgtagtccattgaagctctgcatacaattacaaatgtcagttcataagtataa |
263 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
54790906 |
tcttcagagctgtagtccattgaagctctgcatacagttacgaatgtcagttcataagtataa |
54790844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 54778039 - 54778301
Alignment:
| Q |
1 |
ttctgtttgctgaacctttgcttactccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgag |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54778039 |
ttctgtttgctgaacctttgcttactccggtttcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgag |
54778138 |
T |
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| Q |
101 |
tgtgccgtttaagttcttcactttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactct |
200 |
Q |
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| T |
54778139 |
tgtgccgtttaagttcttcactttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactct |
54778238 |
T |
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| Q |
201 |
tcttcagagctgtagtccattgaagctctgcatacaattacaaatgtcagttcataagtataa |
263 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
54778239 |
tcttcagagctgtagtccattgaagctctgcatacagttacgaatgtcagttcataagtataa |
54778301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 52283764 - 52283502
Alignment:
| Q |
1 |
ttctgtttgctgaacctttgcttactccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgag |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52283764 |
ttctgtttgctgaacctttgcttactccagttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatggacacctgag |
52283665 |
T |
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| Q |
101 |
tgtgccgtttaagttcttcactttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactct |
200 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
52283664 |
tgtaccgtttaaattcttcactttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcgctgatatctgactct |
52283565 |
T |
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| Q |
201 |
tcttcagagctgtagtccattgaagctctgcatacaattacaaatgtcagttcataagtataa |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52283564 |
tcttcagagctgtagtccattgaagctctgcatacaattacaaatgtcagttcgtaagtataa |
52283502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 799040 - 798789
Alignment:
| Q |
1 |
ttctgtttgctgaacctttgcttactccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgag |
100 |
Q |
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|||||||||| |||||||||| |||||| | ||||||||||| || ||||||||| ||||| |||||||| || ||||||| ||||| |||||||| || |
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| T |
799040 |
ttctgtttgccgaacctttgcctactccagatgcatgttgcaacagatccttatacttgaattcttgctttttctttccagagcaatacgggcacctaag |
798941 |
T |
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| Q |
101 |
tgtgccgtttaagttcttcactttgtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactct |
200 |
Q |
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|| || || |||||| |||||||||||||| || ||||||| | ||| ||||| |||||||||||||| ||||||||||||||||| || |||||| |
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| T |
798940 |
agtcccattgttgttcttgactttgtatttaccggcccttaactcttcatatggtttctcagagtattcctcgatctcagactcactgatctctgactct |
798841 |
T |
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| Q |
201 |
tcttcagagctgtagtccattgaagctctgcatacaattacaaatgtcagtt |
252 |
Q |
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|||||||||||||||||||||||| |||||| || ||| |||||||||||| |
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| T |
798840 |
tcttcagagctgtagtccattgaaactctgcgtaagatttcaaatgtcagtt |
798789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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