View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20619_low_37 (Length: 268)

Name: NF20619_low_37
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20619_low_37
NF20619_low_37
[»] chr3 (29 HSPs)
chr3 (1-153)||(36750106-36750258)
chr3 (1-153)||(52492114-52492266)
chr3 (1-88)||(36750337-36750424)
chr3 (1-96)||(38922804-38922900)
chr3 (1-88)||(45242127-45242215)
chr3 (1-88)||(3971053-3971141)
chr3 (1-88)||(3971801-3971889)
chr3 (1-88)||(3997989-3998077)
chr3 (1-88)||(32490094-32490182)
chr3 (1-88)||(38923564-38923652)
chr3 (1-88)||(41756331-41756419)
chr3 (1-88)||(44686315-44686403)
chr3 (1-88)||(44687062-44687150)
chr3 (1-88)||(45242886-45242974)
chr3 (1-88)||(45500534-45500620)
chr3 (1-88)||(3998740-3998828)
chr3 (1-88)||(19132711-19132799)
chr3 (1-88)||(41755560-41755648)
chr3 (1-88)||(52491947-52492035)
chr3 (1-58)||(19132624-19132681)
chr3 (8-88)||(8653622-8653700)
chr3 (4-79)||(8436574-8436648)
chr3 (4-79)||(8440119-8440193)
chr3 (1-71)||(8427277-8427346)
chr3 (23-88)||(11267588-11267651)
chr3 (1-71)||(25025235-25025304)
chr3 (1-71)||(47737629-47737698)
chr3 (1-58)||(32490007-32490064)
chr3 (43-88)||(50305167-50305212)
[»] chr7 (17 HSPs)
chr7 (1-153)||(38072126-38072278)
chr7 (1-153)||(4261266-4261418)
chr7 (1-153)||(7677645-7677796)
chr7 (1-88)||(38071959-38072047)
chr7 (1-88)||(17145683-17145772)
chr7 (1-88)||(669002-669090)
chr7 (1-88)||(37864206-37864294)
chr7 (1-88)||(32859294-32859380)
chr7 (1-88)||(668240-668328)
chr7 (1-88)||(4261495-4261583)
chr7 (1-88)||(7677478-7677566)
chr7 (1-57)||(38778915-38778971)
chr7 (1-58)||(17145802-17145859)
chr7 (1-54)||(38779498-38779550)
chr7 (9-88)||(41194581-41194659)
chr7 (25-80)||(41195275-41195329)
chr7 (1-71)||(27855626-27855695)
[»] chr8 (17 HSPs)
chr8 (1-153)||(5035112-5035263)
chr8 (1-88)||(32536769-32536857)
chr8 (1-88)||(34992163-34992251)
chr8 (1-88)||(37639772-37639860)
chr8 (1-88)||(38023685-38023773)
chr8 (26-88)||(38024430-38024492)
chr8 (1-86)||(41859371-41859457)
chr8 (5-88)||(32537387-32537471)
chr8 (1-88)||(41859995-41860083)
chr8 (1-58)||(5034959-5035016)
chr8 (1-58)||(34992076-34992133)
chr8 (23-80)||(10501822-10501877)
chr8 (1-71)||(7818535-7818604)
chr8 (1-71)||(10806009-10806078)
chr8 (1-71)||(39852759-39852828)
chr8 (116-153)||(37639939-37639976)
chr8 (1-70)||(38778752-38778820)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-153)||(27282-27433)
[»] chr5 (12 HSPs)
chr5 (1-96)||(33001993-33002087)
chr5 (1-88)||(8040256-8040344)
chr5 (1-88)||(686477-686565)
chr5 (1-88)||(33002715-33002803)
chr5 (1-88)||(15183916-15184004)
chr5 (1-86)||(8204181-8204267)
chr5 (1-88)||(687247-687335)
chr5 (1-88)||(15183150-15183238)
chr5 (101-153)||(33002584-33002636)
chr5 (5-58)||(36626560-36626613)
chr5 (1-68)||(12190078-12190145)
chr5 (1-58)||(8040374-8040431)
[»] chr4 (36 HSPs)
chr4 (1-96)||(39523164-39523258)
chr4 (1-96)||(38143628-38143724)
chr4 (1-88)||(10424958-10425046)
chr4 (1-88)||(11417748-11417836)
chr4 (1-88)||(21166274-21166362)
chr4 (1-88)||(29651231-29651319)
chr4 (1-88)||(45230426-45230514)
chr4 (1-88)||(26610406-26610495)
chr4 (1-88)||(10424184-10424272)
chr4 (1-88)||(26611182-26611270)
chr4 (1-88)||(29650476-29650564)
chr4 (1-88)||(31835209-31835297)
chr4 (1-88)||(36865616-36865704)
chr4 (1-86)||(9939183-9939269)
chr4 (1-88)||(38694850-38694941)
chr4 (1-88)||(17648044-17648131)
chr4 (1-88)||(39522436-39522524)
chr4 (1-88)||(45235859-45235947)
chr4 (1-58)||(11417867-11417924)
chr4 (4-88)||(21165511-21165596)
chr4 (1-58)||(38143549-38143606)
chr4 (1-58)||(38694763-38694820)
chr4 (1-96)||(11806152-11806244)
chr4 (1-88)||(36451327-36451414)
chr4 (1-58)||(9939301-9939358)
chr4 (1-58)||(31836390-31836447)
chr4 (1-58)||(36864878-36864935)
chr4 (8-88)||(23383378-23383457)
chr4 (101-153)||(39522603-39522655)
chr4 (1-88)||(25970166-25970250)
chr4 (25-89)||(25970701-25970766)
chr4 (4-82)||(36450792-36450871)
chr4 (1-69)||(5825395-5825459)
chr4 (116-153)||(29651115-29651152)
chr4 (1-41)||(12589348-12589388)
chr4 (23-71)||(20822706-20822754)
[»] chr1 (28 HSPs)
chr1 (1-96)||(6076035-6076127)
chr1 (1-88)||(12925934-12926020)
chr1 (1-88)||(23440678-23440765)
chr1 (1-88)||(9948056-9948144)
chr1 (1-88)||(43737790-43737878)
chr1 (1-96)||(48971766-48971862)
chr1 (1-88)||(16271047-16271135)
chr1 (5-96)||(38930377-38930469)
chr1 (1-88)||(51975126-51975214)
chr1 (5-88)||(6076767-6076850)
chr1 (1-88)||(20794350-20794436)
chr1 (1-88)||(16270268-16270357)
chr1 (1-86)||(48972346-48972432)
chr1 (1-58)||(23440795-23440852)
chr1 (1-88)||(47334260-47334347)
chr1 (1-68)||(9948807-9948874)
chr1 (1-88)||(17050514-17050600)
chr1 (1-88)||(51974498-51974586)
chr1 (5-88)||(193915-193997)
chr1 (101-152)||(6076636-6076687)
chr1 (7-88)||(31390726-31390804)
chr1 (1-86)||(50826992-50827078)
chr1 (1-58)||(43737908-43737965)
chr1 (26-88)||(38931145-38931209)
chr1 (1-88)||(27418224-27418311)
chr1 (1-71)||(7219069-7219138)
chr1 (1-71)||(51247889-51247958)
chr1 (1-71)||(51248439-51248508)
[»] chr6 (12 HSPs)
chr6 (1-96)||(33480519-33480615)
chr6 (1-88)||(3542875-3542963)
chr6 (1-88)||(15082458-15082546)
chr6 (1-88)||(15083217-15083305)
chr6 (1-88)||(22579996-22580084)
chr6 (1-88)||(33018228-33018316)
chr6 (1-88)||(33479757-33479846)
chr6 (1-58)||(3542993-3543050)
chr6 (1-58)||(7193508-7193565)
chr6 (1-58)||(33018346-33018403)
chr6 (1-78)||(7193399-7193474)
chr6 (1-84)||(22587213-22587297)
[»] chr2 (11 HSPs)
chr2 (1-88)||(21471853-21471941)
chr2 (1-88)||(38834448-38834536)
chr2 (1-88)||(21471078-21471166)
chr2 (1-58)||(37548059-37548116)
chr2 (1-88)||(4479603-4479689)
chr2 (1-54)||(14573322-14573374)
chr2 (1-58)||(38834566-38834623)
chr2 (1-57)||(14573930-14573986)
chr2 (5-58)||(13134383-13134436)
chr2 (25-80)||(4478936-4478990)
chr2 (1-71)||(11256696-11256765)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-88)||(58-147)
[»] scaffold0332 (1 HSPs)
scaffold0332 (1-83)||(9162-9245)
[»] scaffold0700 (1 HSPs)
scaffold0700 (1-79)||(5380-5457)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 36750106 - 36750258
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacactaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36750106 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacactaaa 36750205  T
Q  101 tttgtttgatccttgaaaatggtacactaacaagttttccgacagcaaccatg 153  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  36750206 tttgtttgatccttgaaaatggtacgctaacaagttttccggcagcaaccatg 36750258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 52492266 - 52492114
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacactaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52492266 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacactaaa 52492167  T
Q  101 tttgtttgatccttgaaaatggtacactaacaagttttccgacagcaaccatg 153  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  52492166 tttgtttgatccttgaaaatggtacgctaacaagttttccggcagcaaccatg 52492114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36750424 - 36750337
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  |||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  36750424 ttagattaaatgaggaacatatttctatcatactctctcaaccactagattattttttatactatctttcacactctctctttcatgt 36750337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 38922804 - 38922900
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgttctcacac 96  Q
    |||||||||||||| || | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||| |||||||    
T  38922804 ttagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgtcctcacac 38922900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 45242127 - 45242215
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  45242127 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 45242215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3971053 - 3971141
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||| ||||| ||||||| |||||||| ||| |||||||||||||||    
T  3971053 ttagattaaatgaggaacatattcctatcatactctctcaaccacttgattatttttttatactatctttcacactctctctttcatgt 3971141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3971889 - 3971801
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  3971889 ttagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 3971801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3997989 - 3998077
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  3997989 ttagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 3998077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 32490182 - 32490094
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| ||| |||||||||||    
T  32490182 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactccctctttcatgt 32490094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 38923652 - 38923564
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  38923652 ttagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 38923564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 41756419 - 41756331
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||| ||||||||| ||||| |||||||| ||| |||||||||||||||    
T  41756419 ttagattaaatgaggaacatattcctatcatactctctcaaccattagattatttttttatactatctttcacactctctctttcatgt 41756331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 44686315 - 44686403
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||||| || | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  44686315 ttagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 44686403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 44687150 - 44687062
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||| ||||||||| ||||| |||||||| ||| |||||||||||||||    
T  44687150 ttagattaaatgaggaaaatattcctatcatactctctcaaccattagattatttttttatactatctttcacactctctctttcatgt 44687062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 45242974 - 45242886
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| | |||||| ||| |||||||||||||||    
T  45242974 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatattatctttcacactctctctttcatgt 45242886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 45500534 - 45500620
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| ||||||||||  ||||||||||| |||||||||||| |||   |||||||||||||||||||||||||||    
T  45500534 ttagattaaatgaggaacacattcttattctactctctcaa-cactagattattgttttatctatcttccaccctctctctttcatgt 45500620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3998828 - 3998740
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||| ||||||| ||||| ||||||||  || |||||||||||||||    
T  3998828 ttagattaaatgaggaacatattcctatcatactctctcaaccacttgattatttttttatactatcttttacactctctctttcatgt 3998740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 19132799 - 19132711
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||| | |||||| |||  ||||||||||||||    
T  19132799 ttagattaaatgaggaacatattcttatcatactctctcaaccactggattatttttttatattatctttcacattctctctttcatgt 19132711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 41755560 - 41755648
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  |||||||||||||||||||||| |||| ||||||| |||||||| ||| |||||||||||||||    
T  41755560 ttagattaaatgaggaacatatttctatcatactctctcaaccactatattatttttttatactatctttcacactctctctttcatgt 41755648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 52491947 - 52492035
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||| ||||| | |||  ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  52491947 ttagattaaataaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 52492035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19132624 - 19132681
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  19132624 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttt 19132681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 8653700 - 8653622
Alignment:
Q  8 aaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||| || ||| |||||||||| || |||||| ||||||| ||||| ||||||||||||| |||||||||||||||||    
T  8653700 aaatgagaaacacactcttatcatattccctcaac-actagatcattttctacactatcttcc-ccctctctctttcatgt 8653622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 8436648 - 8436574
Alignment:
Q  4 gattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctct 79  Q
    ||||||||| |||| ||||| ||||  |||| ||||||| | ||||||||||||||||||||||||||| ||||||    
T  8436648 gattaaatgtggaacacatttttatactactttctcaac-attagattattttttacactatcttccactctctct 8436574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 8440193 - 8440119
Alignment:
Q  4 gattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctct 79  Q
    ||||||||| |||| ||||| ||||  |||||||||||| | ||||||||||||||||||||||| ||| ||||||    
T  8440193 gattaaatgtggaacacattattatactactctctcaac-attagattattttttacactatctttcactctctct 8440119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 8427277 - 8427346
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||||||||| ||| | ||||||||||| ||||||||| ||||||||| || || |||||||||||||    
T  8427277 ttagattaaatgaagaacatattcttatcatgctctctcaa-cactagatttttcttcacactatcttcca 8427346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 11267651 - 11267588
Alignment:
Q  23 tcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||||  ||| |||||| |||||||||||||||||||||| ||||||||||| |||||    
T  11267651 tcttatcatactccatca-ccactatattattttttacactatcttcc-ccctctctcttccatgt 11267588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 25025235 - 25025304
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||||| ||| ||| | ||||||| ||| |||||||||| |||||||| ||||| |||||||||||||    
T  25025235 ttagattaagtgaagaacatattcttaacatgctctctcaac-actagattttttttcacactatcttcca 25025304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 47737698 - 47737629
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||||| ||| ||| | ||||||||||| ||||||||| ||||||||| || || |||||||||||||    
T  47737698 ttagattaagtgaagaacatattcttatcatgctctctcaa-cactagatttttcttcacactatcttcca 47737629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32490007 - 32490064
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||| ||||| | |||  |||||||||||||||||||||  ||||||||||    
T  32490007 ttagattaaataaggaacatatttctatcatactctctcaaccactgaattatttttt 32490064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 50305212 - 50305167
Alignment:
Q  43 cactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    ||||| |||||| ||||| ||||||||||||||||||||| |||||    
T  50305212 cactatattattctttacgctatcttccaccctctctcttccatgt 50305167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 38072278 - 38072126
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacactaaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38072278 ttagattaaatgatgaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacactaaa 38072179  T
Q  101 tttgtttgatccttgaaaatggtacactaacaagttttccgacagcaaccatg 153  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  38072178 tttgtttgatccttgaaaatggtacgctaacaagttttccggcagcaaccatg 38072126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 4261266 - 4261418
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacactaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  4261266 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaacctctctctttcatgttctcacactata 4261365  T
Q  101 tttgtttgatccttgaaaatggtacactaacaagttttccgacagcaaccatg 153  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||||||||||    
T  4261366 tttgtttgatccttgaaaatggtatgctaacaagttttccggcagcaaccatg 4261418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 7677796 - 7677645
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacactaaa 100  Q
    ||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7677796 ttagattaaatgaggaacacattcttatcatattctctcaac-actaaattattttttacaatatcttccaccctctctctttcatgttctcacactaaa 7677698  T
Q  101 tttgtttgatccttgaaaatggtacactaacaagttttccgacagcaaccatg 153  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7677697 tttgtttgatccttgaaaatggtacgctaacaagttttccgacagcaaccatg 7677645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 38071959 - 38072047
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  38071959 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 38072047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 17145683 - 17145772
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta--ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||  ||||||| |||||||| ||| |||||||||||||||    
T  17145683 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattattttttttatactatctttcacactctctctttcatgt 17145772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 669090 - 669002
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    |||||| |||||||||| | |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  669090 ttagatcaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 669002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 37864294 - 37864206
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||||| || | |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  37864294 ttagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 37864206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32859294 - 32859380
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||| |||| ||||||||||  |||||||||||| | || |||||||||||||||||||||||||||||| |||||||||    
T  32859294 ttagattaaatgtggaacacattcttatactactctctcaac-attaaattattttttacactatcttccaccctctcactttcatgt 32859380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 668240 - 668328
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||| ||| | |||| |||||||||||||||||||| |||||| ||||||| |||||||| ||| |||||||||||||||    
T  668240 ttagattaaatgaagaacatattcctatcatactctctcaaccaccagattatttttttatactatctttcacactctctctttcatgt 668328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 4261583 - 4261495
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  ||||||||||||||||||| ||||||||| ||||| |||||||| ||| |||||||||||||||    
T  4261583 ttagattaaatgaggaacatatttctatcatactctctcaaccattagattatttttttatactatctttcacactctctctttcatgt 4261495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 7677478 - 7677566
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  |||||||||||||||||||||| |||| ||||||| ||||||||  || |||||||||||||||    
T  7677478 ttagattaaatgaggaacatatttctatcatactctctcaaccactaaattatttttttatactatcttttacactctctctttcatgt 7677566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38778915 - 38778971
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttt 57  Q
    ||||||||||||||||  | |||| ||||||||||||||||||||||||||||||||    
T  38778915 ttagattaaatgaggagcatattcctatcatactctctcaaccactagattattttt 38778971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 17145859 - 17145802
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    |||||||||||||  || | |||| |||||||||||||||||||||||||||||||||    
T  17145859 ttagattaaatgaataacatattcctatcatactctctcaaccactagattatttttt 17145802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38779550 - 38779498
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt 54  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  38779550 ttagattaaatgaggaatatattcttataatactctctcaa-cactagattatt 38779498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 41194581 - 41194659
Alignment:
Q  9 aatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||| | |||||||||||||||| || || |||| ||||||||||| | |||||| || | ||||||||||||||    
T  41194581 aatgaggaacatattcttatcatactctttccac-actaaattattttttatattatctttcatcatctctctttcatgt 41194659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 41195329 - 41195275
Alignment:
Q  25 ttatcatactctctcaaccactagattattttttacactatcttccaccctctctc 80  Q
    ||||||||||||||| || |||||||||||||||| |||||||| || ||||||||    
T  41195329 ttatcatactctctccac-actagattattttttatactatctttcatcctctctc 41195275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27855626 - 27855695
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||||| ||| ||| | ||||||||||| ||||||||| ||||||||| || || |||||||||||||    
T  27855626 ttagattaagtgaagaacatattcttatcatgctctctcaa-cactagatttttcttcacactatcttcca 27855695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 5035263 - 5035112
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacactaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5035263 ttagattaaatgaggaatacattcttatcatactctctcaac-actaaattatgttttacactatcttccaccctctctctttcatgttctcacactaaa 5035165  T
Q  101 tttgtttgatccttgaaaatggtacactaacaagttttccgacagcaaccatg 153  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5035164 tttgtttgatccttgaaaatggtacactaacaagttttccggcagcaaccatg 5035112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32536769 - 32536857
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||| |||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  32536769 ttagattaaatggggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 32536857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 34992251 - 34992163
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||| |||| ||||||| |||||||| ||| |||||||||||||||    
T  34992251 ttagattaaatgaggaacatattcctatcatactctctcaaccactaaattatttttttatactatctttcacactctctctttcatgt 34992163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 37639772 - 37639860
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||| ||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  37639772 ttagattaaatgaggaacatattcctatgatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 37639860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 38023685 - 38023773
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  38023685 ttagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 38023773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 38024492 - 38024430
Alignment:
Q  26 tatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  38024492 tatcatactctctcaaccactagattattttttatactatctttcacactctctctttcatgt 38024430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 41859371 - 41859457
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcat 86  Q
    ||||||||||||| ||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||    
T  41859371 ttagattaaatgaagaacatattcatatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcat 41859457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 32537471 - 32537387
Alignment:
Q  5 attaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||| |||||||| | | |||||||||||||||    
T  32537471 attaaataaggaacatattcttatcatactctctcaaccactagattatttttttatactatctttcgcactctctctttcatgt 32537387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 41860083 - 41859995
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  ||||||||| |||||||||||| |||| ||||||| |||||||| ||| |||||||||||||||    
T  41860083 ttagattaaatgaggaacatatttctatcatactttctcaaccactatattatttttttatactatctttcacactctctctttcatgt 41859995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5034959 - 5035016
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  5034959 ttagattgaatgaggaacatattcatatcatactctctcaaccactagattatttttt 5035016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34992076 - 34992133
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||| | |||  |||||||||||||||||||||| ||||||||||    
T  34992076 ttagattaaatgaggaacatatttctatcatactctctcaaccactaaattatttttt 34992133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 10501877 - 10501822
Alignment:
Q  23 tcttatcatactctctcaaccactagattattttttacactatcttccaccctctctc 80  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||    
T  10501877 tcttatcatactc-ctcaac-actagattattttttacactatcatcaaccctctctc 10501822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7818535 - 7818604
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||||| ||| ||| | ||||||||||| ||||||||| ||||||||| || || |||||||||||||    
T  7818535 ttagattaagtgaagaacatattcttatcatgctctctcaa-cactagatttttcttcacactatcttcca 7818604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10806009 - 10806078
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||||||||| ||| | ||||||| ||| ||||||||| ||||||||| || || |||||||||||||    
T  10806009 ttagattaaatgaagaacatattcttaacatgctctctcaa-cactagatttttcttcacactatcttcca 10806078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 39852828 - 39852759
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||||| ||| ||||| ||||||| ||| |||||||||| |||||||| || || |||||||||||||    
T  39852828 ttagattaagtgaagaatatattcttaacatgctctctcaac-actagatttttcttcacactatcttcca 39852759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 37639976 - 37639939
Alignment:
Q  116 aaaatggtacactaacaagttttccgacagcaaccatg 153  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  37639976 aaaatcgtacgctaacaagttttccgacagcaaccatg 37639939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38778820 - 38778752
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcc 70  Q
    ||||||||| ||| ||||| ||| ||| ||||||||||||| ||||||||| || || ||||||||||||    
T  38778820 ttagattaagtgaagaatatatttttaacatactctctcaa-cactagatttttcttcacactatcttcc 38778752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 27282 - 27433
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacactaaa 100  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27282 ttagattaaatgaggaacacattcttatcatactctctcaac-actaaattattttttacactatcttccaccctctctctttcatgttctcatactaaa 27380  T
Q  101 tttgtttgatccttgaaaatggtacactaacaagttttccgacagcaaccatg 153  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  27381 tttgtttgatccttgaaaatggtacgctaacaagttttccggcagcaaccatg 27433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 33001993 - 33002087
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacac 96  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33001993 ttagattaaatgaggaatacattcttatcatattctctcaac-actaaattattttttacactatcttccaccctctctctttcatgttctcacac 33002087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8040256 - 8040344
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||| ||| |||||||||||||||    
T  8040256 ttagattaaatgaggaatatattcttatcatactctctcaaccactacattatttttttatactatctttcacactctctctttcatgt 8040344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 686477 - 686565
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  686477 ttagattaaatgaggaatatattcctatcatattctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 686565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33002803 - 33002715
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  33002803 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 33002715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15184004 - 15183916
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||  ||||||| ||| |||||||||||||||    
T  15184004 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatgctatctttcacactctctctttcatgt 15183916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 8204181 - 8204267
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcat 86  Q
    ||||||||||||||||| | |||| ||||||||| ||||||||||||||||| ||||||| |||||||| ||| |||||||||||||    
T  8204181 ttagattaaatgaggaacatattcctatcatactatctcaaccactagattatttttttatactatctttcacactctctctttcat 8204267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 687335 - 687247
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| |||||||||||||||| ||||| |||| ||||||| |||||||| ||| |||||||||||||||    
T  687335 ttagattaaatgaggaacatattcctatcatactctctcaatcactaaattatttttttatactatctttcacactctctctttcatgt 687247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 15183150 - 15183238
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||| |||||||||    
T  15183150 ttagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactctcactttcatgt 15183238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 33002584 - 33002636
Alignment:
Q  101 tttgtttgatccttgaaaatggtacactaacaagttttccgacagcaaccatg 153  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  33002584 tttgtttgatccttgaaaatggtacgctaacaagttttccggcagcaaccatg 33002636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 36626613 - 36626560
Alignment:
Q  5 attaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  36626613 attaaataaggaatatattcttatcatactctctcaaccactagattatatttt 36626560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12190145 - 12190078
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatctt 68  Q
    ||||||||||||||||| | |||  |||||||||||||||| || |||||||||||||| | ||||||    
T  12190145 ttagattaaatgaggaacatatttctatcatactctctcaatcattagattattttttatattatctt 12190078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8040431 - 8040374
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    |||||||||||  |||| | |||  |||||||||||||||||||||||||||||||||    
T  8040431 ttagattaaatagggaacatatttctatcatactctctcaaccactagattatttttt 8040374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39523258 - 39523164
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacac 96  Q
    ||||||||||||||||||||||  ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39523258 ttagattaaatgaggaatacatctttaccatactctctcaac-actaaattattttttacactatcttccaccctctctctttcatgttctcacac 39523164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 38143724 - 38143628
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgttctcacac 96  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||| |||||||    
T  38143724 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgtcctcacac 38143628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 10425046 - 10424958
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| | |||||| ||| |||||||||||||||    
T  10425046 ttagattaaatgaggaatatattcctatcatactctctcaaccactagattatttttttatattatctttcacactctctctttcatgt 10424958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 11417748 - 11417836
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattat-tttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||||||    
T  11417748 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatatttttatactatctttcacactctctctttcatgt 11417836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 21166362 - 21166274
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  21166362 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 21166274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29651319 - 29651231
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  29651319 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 29651231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 45230426 - 45230514
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  45230426 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 45230514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26610406 - 26610495
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta--ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||  ||||||| |||||||| ||| |||||||||||||||    
T  26610406 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattattttttttatactatctttcacactctctctttcatgt 26610495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10424184 - 10424272
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  10424184 ttagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 10424272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 26611270 - 26611182
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| ||||||||  || |||||||||||||||    
T  26611270 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatcttttacactctctctttcatgt 26611182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 29650476 - 29650564
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||| ||||||||    
T  29650476 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctttttcatgt 29650564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 31835209 - 31835297
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattat-tttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||| |||||| | |||| |||||||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||||||    
T  31835209 ttagattaaacgaggaacatattcctatcatactctctcaaccactagattatctttttatactatctttcacactctctctttcatgt 31835297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36865704 - 36865616
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| ||||||||  || |||||||||||||||    
T  36865704 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatcttttacactctctctttcatgt 36865616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 9939183 - 9939269
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcat 86  Q
    |||||||||||||| || | |||||||||||||||||||||||||||||||| ||||||| |||||||| |||  ||||||||||||    
T  9939183 ttagattaaatgagaaacatattcttatcatactctctcaaccactagattatttttttatactatctttcacattctctctttcat 9939269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 38694941 - 38694850
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt---ac-actatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||   || |||||||| ||| |||||||||||||||    
T  38694941 ttagattaaatgaggaaaatattcatatcatactctctcaaccactagattatttttttatactactatctttcacactctctctttcatgt 38694850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 17648131 - 17648044
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||| || |||| ||||||||| |||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||    
T  17648131 ttagattaaataagaaataaattcttatcttactctctcaac-actatattattgttttacactatcttccatcctctctctttcatgt 17648044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 39522436 - 39522524
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| | | ||| |||||||||||    
T  39522436 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcgcactccctctttcatgt 39522524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 45235947 - 45235859
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  ||||||| ||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  45235947 ttagattaaatgaggaacatatttctatcatattctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 45235859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11417924 - 11417867
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  11417924 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttt 11417867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 21165511 - 21165596
Alignment:
Q  4 gattaaatgaggaatacattcttatcatactctctcaaccactagatt-attttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||||| | |||  |||||||||||||||||||||||||| |||||||| |||||||| |||  ||||||||||||||    
T  21165511 gattaaatgaggaacatatttctatcatactctctcaaccactagattaattttttatactatctttcacagtctctctttcatgt 21165596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38143549 - 38143606
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  38143549 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttt 38143606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38694763 - 38694820
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  38694763 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttt 38694820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11806152 - 11806244
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacac 96  Q
    ||||||||||||||||| ||||| ||||| ||||||||||| |||||| |||||||||||| |||  | ||  |||||||||||||||||||||||    
T  11806152 ttagattaaatgaggaacacatttttatcctactctctcaa-cactagtttattttttacattattattca--ctctctctttcatgttctcacac 11806244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36451414 - 36451327
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||||  || | || |||||| |||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  36451414 ttagattaaatgaaaaacaaatccttatcctactctctcaac-actagattattgttttacactatcttccaccatctctctttcatgt 36451327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9939358 - 9939301
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||    
T  9939358 ttagattaaatgaggaacatattcctatcatactctctcaaccactatattatttttt 9939301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31836447 - 31836390
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||| | |||  |||||||||||||||||||||||||||||||||    
T  31836447 ttagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttt 31836390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36864878 - 36864935
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    |||||||||||||| || | |||| |||||||||||||||||||||||||||||||||    
T  36864878 ttagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttt 36864935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 23383378 - 23383457
Alignment:
Q  8 aaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    |||||| ||| ||| |||||||||||||  ||||  ||||||||| ||||||||||||||||||||||||||||| |||||    
T  23383378 aaatgaagaacacactcttatcatactccatcaat-actagattaatttttacactatcttccaccctctctcttccatgt 23383457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 39522655 - 39522603
Alignment:
Q  101 tttgtttgatccttgaaaatggtacactaacaagttttccgacagcaaccatg 153  Q
    ||||||||||||||||||||||||| |||||||||||| || |||||||||||    
T  39522655 tttgtttgatccttgaaaatggtacgctaacaagtttttcggcagcaaccatg 39522603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 25970166 - 25970250
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||||| || | ||  ||||||||||||||||    |||||||||| ||||||||||||||||||| ||||||||||||||    
T  25970166 ttagattaaatgagaaacaaatctttatcatactctctca----ctagattattgttttacactatcttccaccatctctctttcatgt 25970250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 25970766 - 25970701
Alignment:
Q  25 ttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgtt 89  Q
    ||||| ||||||||||  ||||||||| || ||||||||||||||||||| |||||||||| ||||    
T  25970766 ttatcctactctctcatacactagattgttgttttacactatcttccaccatctctctttcttgtt 25970701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 36450792 - 36450871
Alignment:
Q  4 gattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctt 82  Q
    ||||||||||| || | ||  ||||| ||||||||||  ||||||||| || ||||||||||||||||||| ||||||||    
T  36450792 gattaaatgagtaacaaatctttatcctactctctcatacactagattgttgttttacactatcttccaccatctctctt 36450871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 5825395 - 5825459
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttc 69  Q
    |||||| |||||||||| ||||| ||||| ||||||||||| ||||||   ||||||||||||||||||    
T  5825395 ttagatcaaatgaggaacacattattatcctactctctcaa-cactag---attttttacactatcttc 5825459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 29651115 - 29651152
Alignment:
Q  116 aaaatggtacactaacaagttttccgacagcaaccatg 153  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  29651115 aaaatcgtacgctaacaagttttccgacagcaaccatg 29651152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12589348 - 12589388
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaa 41  Q
    ||||||||||||| |||||||||| |||||||||| |||||    
T  12589348 ttagattaaatgaagaatacattcatatcatactccctcaa 12589388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 20822754 - 20822706
Alignment:
Q  23 tcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||| ||||||||  | ||||| |||||||||||||||||||||||    
T  20822754 tcttatcgtactctctttaacactatattattttttacactatcttcca 20822706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 6076035 - 6076127
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgttctcacac 96  Q
    ||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  6076035 ttagattaaatgaggaatacatttttatcatagtctctcaa-cactaaattattttttacactatcttcca--ctctctctttcatgttctcacac 6076127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 12925934 - 12926020
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||| |||||||||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  12925934 ttagattaaatgtggaatacattcttatactactctctcaac-attagattattttttacactatcttccaccctctctctttcatgt 12926020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23440678 - 23440765
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||||| || | |||| |||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  23440678 ttagattaaatgagaaacatattcctatcatactctctcaaccactagattattttttatactatctttcacactctctctttcatgt 23440765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9948056 - 9948144
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  9948056 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 9948144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 43737790 - 43737878
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||  ||||||||| ||||    
T  43737790 ttagattaaatgaggaatatatttttatcatactctctcaaccactagattatttttttacactatctttcacattctctctttgatgt 43737878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 48971766 - 48971862
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgttctcacac 96  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||| |||| ||||||| |||||||| ||| ||||||||||||||||| |||||    
T  48971766 ttagattaaatgaggaacatattcctatcatactctctcaaccactatattatttttttatactatctttcacactctctctttcatgttcccacac 48971862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 16271135 - 16271047
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| ||||| || ||| |||||||||||||||    
T  16271135 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatatttcacactctctctttcatgt 16271047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 38930377 - 38930469
Alignment:
Q  5 attaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgttctcacac 96  Q
    ||||||| ||||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |||||    
T  38930377 attaaataaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgttcccacac 38930469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 51975214 - 51975126
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  51975214 ttagattaaatgaggaacatattcctatcatactctcttaaccactagattatttttttatactatctttcacactctctctttcatgt 51975126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 6076850 - 6076767
Alignment:
Q  5 attaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||| || | |||| ||||||||||||||||||| |||||||||||||| |||||||| ||| |||||||||||||||    
T  6076850 attaaatgagtaacatattcctatcatactctctcaaccaatagattattttttatactatctttcacactctctctttcatgt 6076767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 20794350 - 20794436
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||| |||| ||||||||||   ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  20794350 ttagattaaatgtggaacacattcttatatcactctctcaac-attagattattttttacactattttccaccctctctctttcatgt 20794436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 16270268 - 16270357
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta--ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||  ||||||| |||||||| ||| ||| |||||||||||    
T  16270268 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattattttttttatactatctttcacactccctctttcatgt 16270357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 48972432 - 48972346
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcat 86  Q
    |||||||||||||| || | |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||    
T  48972432 ttagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcat 48972346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23440852 - 23440795
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  23440852 ttagattaaatgaggaatatattcctatcatactctctcaaccactagattatttttt 23440795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 47334260 - 47334347
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||||| || | || |||||| |||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  47334260 ttagattaaatgagaaacaaatccttatcctactctctcaac-actagattattgttttacactatcttccaccatctctctttcatgt 47334347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9948874 - 9948807
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatctt 68  Q
    ||||||||||||||||| | |||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  9948874 ttagattaaatgaggaacatattcctatcatactctatcaaccactagattattttttatactatctt 9948807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 17050514 - 17050600
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||  || | ||||||||||  |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||    
T  17050514 ttagattaaatatggtacacattcttatactactctctcaat-attagattattttttacactatcttccaccctctctctttcatgt 17050600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 51974498 - 51974586
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||| ||| | |||| ||||||||||||||||| ||||||||| ||||||| |||||||| |||  ||||||||||||||    
T  51974498 ttagattaaatgaagaacatattcctatcatactctctcaactactagattatttttttatactatctttcacattctctctttcatgt 51974586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 193915 - 193997
Alignment:
Q  5 attaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||| | ||||||||||||||||||| | ||||||||||||||||| | |||||| || | ||||||||||||||    
T  193915 attaaatgaggaacatattcttatcatactctctcca-cactagattattttttatattatctttcatcatctctctttcatgt 193997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 6076636 - 6076687
Alignment:
Q  101 tttgtttgatccttgaaaatggtacactaacaagttttccgacagcaaccat 152  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  6076636 tttgtttgatccttgaaaatggtacattaacaagttttccggcagcaaccat 6076687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 31390804 - 31390726
Alignment:
Q  7 taaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||| ||||| ||||| |||||||||||| | ||||||||||||||||||||||| ||  |||||||||||||||    
T  31390804 taaatgaggaacacatttttatcctactctctcaac-attagattattttttacactatctttca--ctctctctttcatgt 31390726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 50827078 - 50826992
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcat 86  Q
    |||||||||||||| || | ||| ||||||||||||||||||||||| |||| ||||||| | |||||| ||| |||||||||||||    
T  50827078 ttagattaaatgagaaacatatttttatcatactctctcaaccactaaattatttttttatagtatctttcacactctctctttcat 50826992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 43737965 - 43737908
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||    
T  43737965 ttagattaaatgaggaacatattcctatcatattctctcaaccactagattatttttt 43737908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 38931209 - 38931145
Alignment:
Q  26 tatcatactctctcaaccactagatta--ttttttacactatcttccaccctctctctttcatgt 88  Q
    |||||||||||||||||||||| ||||  ||||||| | |||||| ||| |||||||||||||||    
T  38931209 tatcatactctctcaaccactatattattttttttatattatctttcacactctctctttcatgt 38931145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27418224 - 27418311
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    |||||| |||||| ||  ||| |||| | |||||||||| | ||||| |||||||| ||||||||||||||   ||||||||||||||    
T  27418224 ttagatcaaatgaagagcacactcttgttatactctctcgaacactatattattttatacactatcttccataatctctctttcatgt 27418311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7219069 - 7219138
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||||||||| ||||| ||||||| ||| || |||||| ||||||||| || || |||||||||||||    
T  7219069 ttagattaaatgaagaatatattcttaacatgctttctcaa-cactagatttttcttcacactatcttcca 7219138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 51247889 - 51247958
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||||| ||| ||||| ||||||| ||| |||||||||| |||||||| || || |||||||||||||    
T  51247889 ttagattaagtgaagaatatattcttaacatgctctctcaac-actagatttttcttcacactatcttcca 51247958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 51248508 - 51248439
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||||| ||| ||| | ||||||| ||||||||||||| ||||||||| || || |||||||||||||    
T  51248508 ttagattaagtgaagaacatattcttaacatactctctcaa-cactagatttttcttcacactatcttcca 51248439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 33480615 - 33480519
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgttctcacac 96  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||| |||||    
T  33480615 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgttcccacac 33480519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3542875 - 3542963
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  3542875 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttaaactatctttcacactctctctttcatgt 3542963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 15082458 - 15082546
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  15082458 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 15082546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15083305 - 15083217
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  15083305 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 15083217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22579996 - 22580084
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| |||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  22579996 ttagattaaatgaggaacatattcctatcatactctctcaatcactagattatttttttatactatctttcacactctctctttcatgt 22580084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 33018228 - 33018316
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | ||| |||||||||||||||||||| ||||||| ||||||| |||||||| ||| |||||||||||||||    
T  33018228 ttagattaaatgaggaacatatttttatcatactctctcaaccattagattatttttttatactatctttcacactctctctttcatgt 33018316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 33479757 - 33479846
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta--ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||  |||||||||||||||||||||||||||  ||||||| |||||||| ||| |||||| ||||||||    
T  33479757 ttagattaaatgaggaacatatttctatcatactctctcaaccactagattattttttttatactatctttcacactctctatttcatgt 33479846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3543050 - 3542993
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  3543050 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttt 3542993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7193565 - 7193508
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||    
T  7193565 ttagattaaatgaggaatatatttctatcatactctctcaaccactagattatttttt 7193508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33018403 - 33018346
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||| | |||  |||||||||||||||||||||||||||||||||    
T  33018403 ttagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttt 33018346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 7193399 - 7193474
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctc 78  Q
    ||||||||||||||||| | |||||||||||||||||||||||   |||||| ||||||| |||||||| ||| |||||    
T  7193399 ttagattaaatgaggaacatattcttatcatactctctcaacc---agattatttttttatactatctttcacactctc 7193474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 22587297 - 22587213
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttc 84  Q
    ||||||||||||||||| | |||  ||| |||||| ||||| |||||||||||| ||||| |||||||| ||| |||||||||||    
T  22587297 ttagattaaatgaggaacatatttctattatactcactcaatcactagattatttttttatactatctttcacactctctctttc 22587213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 21471941 - 21471853
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  21471941 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 21471853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 38834448 - 38834536
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  38834448 ttagattaaatgaggaacatatttttatcatactctctcaaccactagattatttttttatactatctttcacactctctctttcatgt 38834536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 21471078 - 21471166
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagatta-ttttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||| ||| | |||| ||||||||||||||| ||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  21471078 ttagattaaatgaagaacatattcctatcatactctctcagccactagattatttttttatactatctttcacactctctctttcatgt 21471166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37548059 - 37548116
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  37548059 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttt 37548116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 4479689 - 4479603
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | ||||||||||||||||||| | ||||| ||||||||||| | |||||| || | ||||||||||||||    
T  4479689 ttagattaaatgaggaacatattcttatcatactctctcca-cactaaattattttttatattatctttcatcatctctctttcatgt 4479603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14573322 - 14573374
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt 54  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  14573322 ttagattaaatgaggaatatatttttatcatactctctcaa-cactagattatt 14573374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 38834623 - 38834566
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||| ||| | |||  |||||||||||||||||||||||||||||||||    
T  38834623 ttagattaaatgaagaacatatttctatcatactctctcaaccactagattatttttt 38834566  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14573986 - 14573930
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttt 57  Q
    |||||||||||||| || | |||| |||||||||||||||||||||||||| |||||    
T  14573986 ttagattaaatgagaaacatattcctatcatactctctcaaccactagattgttttt 14573930  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 13134383 - 13134436
Alignment:
Q  5 attaaatgaggaatacattcttatcatactctctcaaccactagattatttttt 58  Q
    ||||||||||||| | |||  ||||||||||| |||||||||||||||||||||    
T  13134383 attaaatgaggaacatatttctatcatactctatcaaccactagattatttttt 13134436  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 4478936 - 4478990
Alignment:
Q  25 ttatcatactctctcaaccactagattattttttacactatcttccaccctctctc 80  Q
    ||||||||||||||| || |||||||||||||||| |||||||| || ||||||||    
T  4478936 ttatcatactctctccac-actagattattttttatactatctttcatcctctctc 4478990  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11256765 - 11256696
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttcca 71  Q
    ||||||||| ||| ||||| ||||||| ||| |||||||||| |||||||| || || |||||||||||||    
T  11256765 ttagattaagtgaagaatatattcttaacatgctctctcaac-actagatttttcttcacactatcttcca 11256696  T

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Target: scaffold0311 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 147 - 58
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt--ttttacactatcttccaccctctctctttcatgt 88  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||  ||||| |||||||| ||| |||||||||||||||    
T  147 ttagattaaatgaggaacatattcctatcatactctctcaaccactagattattttttttatactatctttcacactctctctttcatgt 58  T

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Target: scaffold0332 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9245 - 9162
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattatt-ttttacactatcttccaccctctctcttt 83  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||    
T  9245 ttagattaaatgatgaacatattcttatcatactctctcaaccactagattatttttttatactatctttcacactctctcttt 9162  T

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Target: scaffold0700 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 5380 - 5457
Alignment:
Q  1 ttagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctctct 79  Q
    |||||||||||||| || ||||||||||| |||||| || |  ||||||||||||||||   |||||||||| ||||||    
T  5380 ttagattaaatgagaaacacattcttatcctactctttcca-tactagattattttttatgatatcttccacactctct 5457  T

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