View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_40 (Length: 254)
Name: NF20619_low_40
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_40 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 39029856 - 39029615
Alignment:
| Q |
13 |
aatatttacattttcaatcatatgtaatcaatcactaaaatcactagaaatatttacctttaaccataactgcttttaaagtcacgcatctaatttggtg |
112 |
Q |
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| T |
39029856 |
aatatttacattttcaatcatatgtaatcaatcaccaaaatcactagaaatatttacctttaaccataactgcttttaaagtcacacatgtaatttggtg |
39029757 |
T |
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| Q |
113 |
acagtgcaaaatttgtacactaatcgcgcgtataaaaagtaaattcatataatataaatagatatcttacacaagcgctgaaatttttctttcagctctg |
212 |
Q |
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| T |
39029756 |
acagtgcaaaatttgtacactaatcgcgtgtataaaaagtaaattcatataatataaatagatatcttacacatgcgctgaaatttttctttcagctctg |
39029657 |
T |
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| Q |
213 |
tcttgtgctcactatttgtgatgtggaagtagaagtctggat |
254 |
Q |
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| T |
39029656 |
tcttgtgctcactatttgtgatgcggaagtagaagtctggat |
39029615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 37859718 - 37859797
Alignment:
| Q |
170 |
atagatatcttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtc |
249 |
Q |
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| T |
37859718 |
atagatatcttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgatgcggaaatagtagtc |
37859797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 37863712 - 37863792
Alignment:
| Q |
174 |
atatcttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtctggat |
254 |
Q |
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| T |
37863712 |
atatcttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggat |
37863792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 1491769 - 1491713
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat |
234 |
Q |
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| T |
1491769 |
cttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgat |
1491713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 44128347 - 44128279
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaa |
246 |
Q |
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| T |
44128347 |
cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaa |
44128279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 44132552 - 44132484
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaa |
246 |
Q |
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| T |
44132552 |
cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaa |
44132484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 44140974 - 44140906
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaa |
246 |
Q |
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| T |
44140974 |
cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaa |
44140906 |
T |
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