View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20619_low_41 (Length: 250)

Name: NF20619_low_41
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20619_low_41
NF20619_low_41
[»] chr7 (13 HSPs)
chr7 (4-234)||(32065707-32065937)
chr7 (1-233)||(32066222-32066452)
chr7 (6-233)||(32065451-32065676)
chr7 (3-234)||(32073971-32074201)
chr7 (52-234)||(32072881-32073063)
chr7 (33-231)||(32066485-32066682)
chr7 (57-231)||(32065972-32066146)
chr7 (1-234)||(32065193-32065425)
chr7 (3-234)||(32073710-32073943)
chr7 (1-111)||(32065056-32065166)
chr7 (111-211)||(32066755-32066855)
chr7 (1-62)||(32073624-32073685)
chr7 (112-211)||(32052337-32052437)
[»] chr1 (1 HSPs)
chr1 (24-71)||(38822022-38822069)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 32065937 - 32065707
Alignment:
Q  4 tgtcggtgagtaaatggtgacacacaaagtgagttctctcatttcaaccaaattttattcatgcacgattgtaaggaatcaaacttatgtccaatttctt 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32065937 tgtcggtgagtaaatggtgacacacaaagtgagttctttcattccaaccaaattttattcatgcacgattgtaaggaatcaaacttatgtccactttctt 32065838  T
Q  104 atggagttagtcaaatttatttgatctgaattcggaccaaatatattttacttttgtgttactcacatgatgttttacctttacaccatattaaataatg 203  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  32065837 atggagttagtcaaatttatttgatctgaattcataccaaatacattttactttagtgttactcacatgacgttttacctttacaccatattaaataatg 32065738  T
Q  204 agagataagtactttatttatctgtattttt 234  Q
    |||||||||||||||||||||||||||||||    
T  32065737 agagataagtactttatttatctgtattttt 32065707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 32066452 - 32066222
Alignment:
Q  1 cggtgtcggtgagtaaatggtgacacacaaagtgagttctctcatttcaaccaaattttattcatgcacgattgtaaggaatcaaacttatgtccaattt 100  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||| |||||| ||||| | |||||||||||||||||||||||||||| |||||||| |||    
T  32066452 cggtgtcagtgagtaaatgctgacacacaaagtgaattctctcctttcaatcaaatatcattcatgcacgattgtaaggaatcaaacatatgtccacttt 32066353  T
Q  101 cttatggagttagtcaaatttatttgatctgaattcggaccaaatatattttacttttgtgttactcacatgatgttttacctttacaccatattaaata 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||| |||| |||||||| || |||||||||    
T  32066352 cttaaggagttagtcaaatttatttgatctgaattcggaccaaatacattttactttagtgttacccatatgacgtttgacctttacgccgtattaaata 32066253  T
Q  201 atgagagataagtactttatttatctgtatttt 233  Q
    |||||||||||  ||||||||| ||||| ||||    
T  32066252 atgagagataa--actttatttgtctgtttttt 32066222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 32065676 - 32065451
Alignment:
Q  6 tcggtgagtaaatggtgacacacaaagtgagttctctcatttcaaccaaattttattcatgcacgattgtaaggaatcaaacttatgtccaatttcttat 105  Q
    |||||||||||||||||||||||||| |||||| |||| || ||||||||| | |||||||||||||||||||||||||||| |||| ||| |||||||     
T  32065676 tcggtgagtaaatggtgacacacaaaatgagttatctccttccaaccaaatatcattcatgcacgattgtaaggaatcaaacatatgcccactttcttaa 32065577  T
Q  106 ggagttagtcaaatttatttgatctgaattcggaccaaatatattttacttttgtgttactcacatgatgttttacctttacaccatattaaataatgag 205  Q
    ||||||||||||||||||||| | ||||||||||||||||| |||||||||| |||| |||||  ||| |||| ||||||||  | ||||||||||||||    
T  32065576 ggagttagtcaaatttatttgttttgaattcggaccaaataaattttactttagtgtaactcatctgacgtttgacctttacgtcgtattaaataatgag 32065477  T
Q  206 agataagtactttatttatctgtatttt 233  Q
    ||||||  ||||||||| ||||| ||||    
T  32065476 agataa--actttatttgtctgtttttt 32065451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 32074201 - 32073971
Alignment:
Q  3 gtgtcggtgagtaaatggtgacacacaaagtgagttctctcatttcaaccaaattttattcatgcacgattgtaaggaatcaaacttatgtccaatttct 102  Q
    |||||||||||| ||| ||||||||||||||||  |||||| || |||||||||||||||||||||||| |||||||| |||||| ||||| || ||||     
T  32074201 gtgtcggtgagtcaatagtgacacacaaagtga--tctctccttccaaccaaattttattcatgcacgaatgtaaggagtcaaacatatgttcactttca 32074104  T
Q  103 tatggagttagtcaa-atttatttgatctgaattcggaccaaatatattttacttttgtgttactcacatgatgttttacctttacaccatattaaataa 201  Q
     | |||||||||||| || |||||||||||||||||||||| ||| |||||||||| |||||||||| |||| |||| ||| |||  || ||||||||||    
T  32074103 caaggagttagtcaatatgtatttgatctgaattcggaccacatacattttactttagtgttactcatatgacgtttgaccattatgccgtattaaataa 32074004  T
Q  202 tgagagataagtactttatttatctgtattttt 234  Q
    |||||||||||||||  |||| |||||||||||    
T  32074003 tgagagataagtactccatttgtctgtattttt 32073971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 52 - 234
Target Start/End: Complemental strand, 32073063 - 32072881
Alignment:
Q  52 caaattttattcatgcacgattgtaaggaatcaaacttatgtccaatttcttatggagttagtcaaatttatttgatctgaattcggaccaaatatattt 151  Q
    |||||||||||||||||| | ||||| ||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||    
T  32073063 caaattttattcatgcactagtgtaaagaatcaaacatatgtccactttcttaaggagttagtcaaatgtatttgatctgaattcggaccaaatacattt 32072964  T
Q  152 tacttttgtgttactcacatgatgttttacctttacaccatattaaataatgagagataagtactttatttatctgtattttt 234  Q
    |||| | ||||||||||  ||  |||| |||||||| || ||||||||||| ||||||||||||||||||| |||||||||||    
T  32072963 tactgtagtgttactcatctgcagtttgacctttacgccgtattaaataataagagataagtactttatttgtctgtattttt 32072881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 33 - 231
Target Start/End: Complemental strand, 32066682 - 32066485
Alignment:
Q  33 tgagttctctcatttcaaccaaattttattcatgcacgattgtaaggaatcaaacttatgtccaatttcttatggagttagtcaaatttatttgatctga 132  Q
    ||||||| ||| || ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| ||| || |||||    
T  32066682 tgagttccctccttccaaccaaattt-attcatgcacgattgtaaggaatcaaacatatgtccactttcttaaggagttagtcaaatgtatatgttctga 32066584  T
Q  133 attcggaccaaatatattttacttttgtgttactcacatgatgttttacctttacaccatattaaataatgagagataagtactttatttatctgtatt 231  Q
    |||||||| ||||  |||||||||| ||||||||||  ||| |||| | |||||| || ||||||||||||||||||||||||||||||| ||| ||||    
T  32066583 attcggacgaaatgcattttactttagtgttactcatctgacgtttgaactttacgccgtattaaataatgagagataagtactttatttgtctatatt 32066485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 57 - 231
Target Start/End: Complemental strand, 32066146 - 32065972
Alignment:
Q  57 tttattcatgcacgattgtaaggaatcaaacttatgtccaatttcttatggagttagtcaaatttatttgatctgaattcggaccaaatatattttactt 156  Q
    |||||| ||| ||||||||||| | |||||| |||||||| ||||||| |||||||||||||| |||||  ||||||||||||| ||||| |||||||||    
T  32066146 tttattaatgtacgattgtaagtactcaaacatatgtccactttcttaaggagttagtcaaatgtattttttctgaattcggacgaaatacattttactt 32066047  T
Q  157 ttgtgttactcacatgatgttttacctttacaccatattaaataatgagagataagtactttatttatctgtatt 231  Q
    | ||||||||||  ||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  32066046 tagtgttactcatctgacgtttgacctttacgccatattaaataatgagagataagtactttatttgtctatatt 32065972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 32065425 - 32065193
Alignment:
Q  1 cggtgtcggtgagtaaatggtgacacacaaagtgagttctctcatttcaaccaaattttattcatgcacgattgtaaggaatcaaacttatgtccaattt 100  Q
    |||||||| ||||| ||||||||||||     ||||||| ||| || ||||||||||| ||||||||||||| |||||||||||||| | |||||| |||    
T  32065425 cggtgtcgttgagtcaatggtgacaca-----tgagttccctccttccaaccaaattt-attcatgcacgatagtaaggaatcaaacatttgtccacttt 32065332  T
Q  101 cttatggagttagtcaaatttatttgatctgaattcggaccaaatatattttactttt-----gtgttactcacatgatgttttacctttacaccatatt 195  Q
    |||| |||||||||||||| |||||| ||||||||| ||| ||||| ||||||||||      |||||||| |  ||| |||| |||||||| || ||||    
T  32065331 cttaaggagttagtcaaatgtatttgttctgaattcagacgaaatacattttactttaatttagtgttactgatctgacgtttgacctttacgccgtatt 32065232  T
Q  196 aaataatgagagataagtactttatttatctgtattttt 234  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  32065231 aaataatgagagataagtacgttatttgtctgtattttt 32065193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 32073943 - 32073710
Alignment:
Q  3 gtgtcggtgagtaaatggtgacacacaaagtgagttctctcatttcaaccaaattttatt---catgcacgattgtaaggaatcaaacttatgtccaatt 99  Q
    |||||||||||| ||| ||||||||||||||||  |||||| || ||||||||||||| |   ||||||||| ||||||||||||||| |||||||| ||    
T  32073943 gtgtcggtgagtcaatagtgacacacaaagtga--tctctccttccaaccaaattttaataatcatgcacgagtgtaaggaatcaaacatatgtccactt 32073846  T
Q  100 tcttatggagttagtcaaatt-tatttgatctgaattcggaccaaatatattttacttttgtgttactcacatgatgttttacctttacaccatattaaa 198  Q
    || || ||||||||||||| | |||||||||| | |||  || | ||| ||||||| |  |||||||||| |||| |||| |||||||| || |||||||    
T  32073845 tcataaggagttagtcaaaatgtatttgatctaagttcaaacaacatacattttacataagtgttactcatatgacgtttgacctttacgccgtattaaa 32073746  T
Q  199 taatgagagataagtactttatttatctgtattttt 234  Q
    ||||||||||||||||||| |||| |||||||||||    
T  32073745 taatgagagataagtacttcatttgtctgtattttt 32073710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 32065166 - 32065056
Alignment:
Q  1 cggtgtcggtgagtaaatggtgacacacaaagtgagttctctcatttcaaccaaattttattcatgcacgattgtaaggaatcaaacttatgtccaattt 100  Q
    ||||||| |||||| ||||||||||||| |||||||||||||  || |||||||||||||||||||||||| ||||| ||||||||| ||| |||| |||    
T  32065166 cggtgtcagtgagtcaatggtgacacacgaagtgagttctcttcttccaaccaaattttattcatgcacgagtgtaaagaatcaaacatatatccacttt 32065067  T
Q  101 cttatggagtt 111  Q
    |||| ||||||    
T  32065066 cttaaggagtt 32065056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 32066855 - 32066755
Alignment:
Q  111 tagtcaaatttatttgatctgaattcggaccaaatatattttacttttgtgttactcacatgatgttttacctttacaccatattaaataatgagagata 210  Q
    ||||||||| ||| |||||||||||||||||||||| |||||||||| ||||||||||  ||| |||| | |||||| || |||||||||||||||||||    
T  32066855 tagtcaaatgtatatgatctgaattcggaccaaatacattttactttagtgttactcatctgacgtttgaactttacgccgtattaaataatgagagata 32066756  T
Q  211 a 211  Q
    |    
T  32066755 a 32066755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32073685 - 32073624
Alignment:
Q  1 cggtgtcggtgagtaaatggtgacacacaaagtgagttctctcatttcaaccaaattttatt 62  Q
    |||||||||||||| |||||||||||||||||| |||||  || || |||||||||||||||    
T  32073685 cggtgtcggtgagttaatggtgacacacaaagtcagttcaatccttccaaccaaattttatt 32073624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 32052437 - 32052337
Alignment:
Q  112 agtcaaatttatttgatctgaattcggaccaaatatattttac-ttttgtgttactcacatgatgttttacctttacaccatattaaataatgagagata 210  Q
    |||||||| |||||||||| ||||  ||||||||| ||||||| ||||||||||||| | | | ||||   ||||||||| ||| |||||||||||||||    
T  32052437 agtcaaatgtatttgatctaaatttagaccaaatacattttacattttgtgttactcgcctaacgtttggtctttacaccctatcaaataatgagagata 32052338  T
Q  211 a 211  Q
    |    
T  32052337 a 32052337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 38822022 - 38822069
Alignment:
Q  24 cacacaaagtgagttctctcatttcaaccaaattttattcatgcacga 71  Q
    ||||||||||| |||||||||| ||||||||||||| ||| |||||||    
T  38822022 cacacaaagtgcgttctctcatctcaaccaaattttcttcgtgcacga 38822069  T

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