View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_43 (Length: 243)
Name: NF20619_low_43
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 713629 - 713403
Alignment:
| Q |
1 |
taaaaacgcaataagtttaagtaaactacactatttaattgatcaaatatccaaaatacctctaatgttataataaattttcaaaatagtcatatataaa |
100 |
Q |
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| T |
713629 |
taaaaacgcaataagtttaagtaaattacactatttaattgataaaatatccaaaatacctctaatattataataaattttcaaaatagtcatatatgaa |
713530 |
T |
|
| Q |
101 |
ttcaaatttcctacgatcatcaattgtacacattcactccttatcaactaagttgcattttcaaagagctatagtgagaaattcttccctatcaaaagta |
200 |
Q |
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| T |
713529 |
ttcaaatttcctacgatcatcaattgtacacattcactccttatcaactaagttccattttcaaagagctatagtgagaaattcttccgtatcaaaagta |
713430 |
T |
|
| Q |
201 |
agttacaaatgctactatacaatatat |
227 |
Q |
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| T |
713429 |
agttacaaatgctactatacaatatat |
713403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 710239 - 710325
Alignment:
| Q |
136 |
actccttatcaactaagttgcattttcaaagagctatagtgagaaattcttcc-ctatcaaaagtaagttacaaatgctactatacaat |
223 |
Q |
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|||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||| ||||| ||| ||||||||||||| |||| |
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| T |
710239 |
actccttatcaaataagttgaattttcaaggagctatagtgagaaattcttcctttatc--aagtatgttgcaaatgctactattcaat |
710325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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