View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_49 (Length: 222)
Name: NF20619_low_49
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_49 |
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| [»] scaffold1183 (1 HSPs) |
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| [»] scaffold1384 (1 HSPs) |
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Alignment Details
Target: scaffold1183 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold1183
Description:
Target: scaffold1183; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 2379 - 2510
Alignment:
| Q |
1 |
gatacatcgataacacataaacacttaaacagagatgacgatatcaggctttgaaatggtaaaagcgaatcattaaatgaggtattaagccatcactcag |
100 |
Q |
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| T |
2379 |
gatacatcgataacacataaacacttaaacagagatgaccatatcaggctttgaaatggtaaaagctaatcattaaatgaggtattaagccatcactcag |
2478 |
T |
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| Q |
101 |
ctaacaagtcttttatagactttacaatacag |
132 |
Q |
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| T |
2479 |
ctaacaagtcttttatagactttacaatacag |
2510 |
T |
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Target: scaffold1384 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold1384
Description:
Target: scaffold1384; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 112 - 39
Alignment:
| Q |
73 |
ttaaatgaggtattaagccatcactcagctaacaagtcttttatagactttacaatacagggaagacatgtttg |
146 |
Q |
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| T |
112 |
ttaaatgaggtattaacccatcactcagctaacaagtcttttatagactttacaatacagagaagacatgtttg |
39 |
T |
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Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 18317396 - 18317323
Alignment:
| Q |
73 |
ttaaatgaggtattaagccatcactcagctaacaagtcttttatagactttacaatacagggaagacatgtttg |
146 |
Q |
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| T |
18317396 |
ttaaatgaggtattaacccatcactcagctaacaagtcttttatagactttacaatacagagaagacatgtttg |
18317323 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 37712244 - 37712180
Alignment:
| Q |
141 |
tgtttggattgacttagttttgagcttacgaaaatatactttatgccaataaataaactttgatgt |
206 |
Q |
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| T |
37712244 |
tgtttggattgacttatttttgagcttacgaaaa-atagcttatgcaaataaataaacttttatgt |
37712180 |
T |
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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 18317177 - 18317122
Alignment:
| Q |
142 |
gtttggattgacttagttttgagcttacgaaaatatactttatgccaataaataaac |
198 |
Q |
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| T |
18317177 |
gtttggattgacttagctttgagcttaagaaaataaac-ttatgccaataaataaac |
18317122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 26988326 - 26988273
Alignment:
| Q |
140 |
atgtttggattgacttagttttgagcttacgaaaatatactttatgccaataaat |
194 |
Q |
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| T |
26988326 |
atgtttggattgacttatttttgagcttatgaaaa-atagtttatgcaaataaat |
26988273 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 29390460 - 29390524
Alignment:
| Q |
141 |
tgtttggattgacttagttttgagcttacgaaaatatactttatgccaataaataaactttgatgt |
206 |
Q |
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| T |
29390460 |
tgtttggattgacttatttttgagcttatgaaaa-atagtttatgcaaataaataagcttttatgt |
29390524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 12816810 - 12816874
Alignment:
| Q |
141 |
tgtttggattgacttagttttgagcttacgaaaatatactttatgccaataaataaactttgatgt |
206 |
Q |
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| T |
12816810 |
tgtttggattaacttatttttgagcttatgaaaa-atagtttatgcaaataaataagcttttatgt |
12816874 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 3564382 - 3564319
Alignment:
| Q |
142 |
gtttggattgacttagttttgagcttacgaaaatatactttatgccaataaataaactttgatgt |
206 |
Q |
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| T |
3564382 |
gtttggattgacttatttttgagcttatgaaaa-atagcttatgcaaataaataatcttttatgt |
3564319 |
T |
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