View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_50 (Length: 221)
Name: NF20619_low_50
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 21445253 - 21445445
Alignment:
| Q |
19 |
aaagctggcgaggatgttgtggacgctatataccaactatctaagacatatgatcatcgtcgatctctaagcataatttctgcgaccggttttatatcag |
118 |
Q |
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| T |
21445253 |
aaagctggcgaggatgttgtggacgctatataccaactatctaagacatatgatcatcgtcgatatctaagcataatttctgcgaccggttttatatcag |
21445352 |
T |
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| Q |
119 |
acattgtctttcgtgatcaatatggttatttcaagggcttgaaagtatcttacatgacttcgttatatgtatcacgtctggtagatgatgatg |
211 |
Q |
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| T |
21445353 |
acattgtctttcgtgatcaatatggttatttcaagggcttgaaagtatcttacatgacttcgttatatgtatcacgtctggttgatgaagatg |
21445445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 35890593 - 35890709
Alignment:
| Q |
29 |
aggatgttgtggacgctatataccaactatctaagacatatgatcatcgtcgatctctaagcataatttctgcgaccggttttatatcagacattgtctt |
128 |
Q |
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| T |
35890593 |
aggatgtagtggatgctatataccaactatctgcgacatatgatcatcgtcaatttgttaggataatttctgcgaccggttctgtatcaggcattgtctt |
35890692 |
T |
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| Q |
129 |
tcgtgatcaatatggtt |
145 |
Q |
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| T |
35890693 |
ttgtgatcaatatggtt |
35890709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 34989897 - 34989995
Alignment:
| Q |
37 |
gtggacgctatataccaactatctaagacatatgatcatcgtcgatctctaagcataatttctgcgaccggttttatatcagacattgtctttcgtgat |
135 |
Q |
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| T |
34989897 |
gtggatgctgtatatcaactatctgaggcatatgatcatcgtcgtcatgttagcatagtttttgcgactggttttgtatcaatgattgtctttcgtgat |
34989995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 29623754 - 29623910
Alignment:
| Q |
23 |
ctggcgaggatgttgtggacgctatataccaactatctaagacatatgatcatcgtcgatctctaagcataatttctgcgaccggttttatatcagacat |
122 |
Q |
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||||| |||||||| |||||||| ||||| |||||||| || |||||||||||| ||||| | | || |||||||||||||| |||| | |||||| | |
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| T |
29623754 |
ctggccaggatgttttggacgctttatacaaactatctgaggcatatgatcatcatcgatttgttagtataatttctgcgactggttctgcatcagatgt |
29623853 |
T |
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| Q |
123 |
tgtctttcgtgatcaatatggttatttcaagggcttgaaagtatcttacatgacttc |
179 |
Q |
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| T |
29623854 |
tgtcatccgtgatcaatatggttcttacaagcgcatggaagtatcttatatgacttc |
29623910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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