View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20619_low_6 (Length: 633)

Name: NF20619_low_6
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20619_low_6
NF20619_low_6
[»] chr2 (4 HSPs)
chr2 (259-615)||(37658705-37659061)
chr2 (155-261)||(11361771-11361876)
chr2 (179-262)||(17641379-17641461)
chr2 (200-260)||(5568385-5568446)
[»] chr1 (3 HSPs)
chr1 (119-260)||(29500326-29500464)
chr1 (155-215)||(31123291-31123351)
chr1 (15-52)||(29500222-29500259)
[»] chr8 (2 HSPs)
chr8 (122-261)||(40499433-40499572)
chr8 (155-208)||(39037402-39037456)
[»] chr6 (1 HSPs)
chr6 (119-260)||(14526792-14526933)
[»] chr7 (2 HSPs)
chr7 (180-262)||(12489525-12489606)
chr7 (154-223)||(43016466-43016535)
[»] chr3 (1 HSPs)
chr3 (155-261)||(35495300-35495405)
[»] chr4 (1 HSPs)
chr4 (155-223)||(23112156-23112224)


Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 259 - 615
Target Start/End: Complemental strand, 37659061 - 37658705
Alignment:
Q  259 ccttttcttatagaaccaaacctcttacatttacatttgccnnnnnnngcttaaaaagtaaaggagtgcagatactattatatattgacttgtatcttct 358  Q
    ||||||||||||| |||||||||||||||||||||||||||       | ||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  37659061 ccttttcttataggaccaaacctcttacatttacatttgcctttttttgtttaaaagttaaaggagtgcagatactattatatattgacttgtatcttct 37658962  T
Q  359 tgctttataaaatattaggatcccctgttctttatcatattttaatcacacatttctttttagagaaaaaatatatattttagtcatgcatatcaataca 458  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37658961 tgctttataaaatattaggatcccccgttctttatcatattttaatcatacatttctttttagagaaaaaatatatattttagtcatgcatatcaataca 37658862  T
Q  459 caatctaaagttcattgtatacaccatgttagtaaaaacatttttagtgcttgatgaattaaccattaaggaaaccaaaaggaatcatgaacagaaattt 558  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37658861 caatctaaagctcattgtatacaccatgttagtaaaaacatttttagtgcttgatgaattaaccattaaggaaaccaaaaggaatcatgaacagaaattt 37658762  T
Q  559 ggtcaaaaggggatatgaatttcttaagacactttttatgggatctttttatgcttt 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37658761 ggtcaaaaggggatatgaatttcttaagacactttttatgggatctttttatgcttt 37658705  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 11361771 - 11361876
Alignment:
Q  155 aaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtgcaaagaggtgtatgaaaaagagtggtctatgtgtct 254  Q
    |||||| ||||||| || ||  |||||||| |||||||||  |||||||||||||||||||||  |||| |||| || |  || |||||||||||| |||    
T  11361771 aaactatcaaactacccatattgcgtgaaactaccaaactgtccctgccacatcagcagtggtataaaggggtggat-attaaaagtggtctatgtatct 11361869  T
Q  255 ttttcct 261  Q
    |||||||    
T  11361870 ttttcct 11361876  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 17641461 - 17641379
Alignment:
Q  179 gtgaaattaccaaactacccctgccacatcagcagtggtgcaaagaggtgtatgaaaaagagtggtctatgtgtctttttcctt 262  Q
    |||||||||| ||| | ||| | |||||| |  |||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  17641461 gtgaaattactaaaatgcccataccacattattagtggtgcaaaggggtgtat-agaaagagtggtctatgtatctttttcctt 17641379  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 5568385 - 5568446
Alignment:
Q  200 tgccacatcagcagtggtgcaaagaggtgtatgaaaa-agagtggtctatgtgtctttttcc 260  Q
    |||||||||||||||||| ||||| ||||||| |||| ||||||||  |||| |||||||||    
T  5568385 tgccacatcagcagtggtacaaaggggtgtattaaaagagagtggtacatgtatctttttcc 5568446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 119 - 260
Target Start/End: Original strand, 29500326 - 29500464
Alignment:
Q  119 acggatctgcgaacggagaagaggaagagattgtgaaaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtg 218  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||   |||||||     
T  29500326 acggatctgcgaacagagaagaggaagagattgtgaaaactaccaaactatccctaacacgtgaaattaccaaactacccctgccacat---cagtggta 29500422  T
Q  219 caaagaggtgtatgaaaaagagtggtctatgtgtctttttcc 260  Q
    ||||||| |||||| ||||||||||||||||| |||||||||    
T  29500423 caaagagatgtatggaaaagagtggtctatgtatctttttcc 29500464  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 31123351 - 31123291
Alignment:
Q  155 aaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtg 215  Q
    |||||||||||||| |||||  | ||||||||||||||||||| |||||||||||||||||    
T  31123351 aaactaccaaactacccctattgtgtgaaattaccaaactacctctgccacatcagcagtg 31123291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 29500222 - 29500259
Alignment:
Q  15 gaaggagacatggggtgagttgagaacatgtgttggtt 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29500222 gaaggagacatggggtgagttgagaacatgtgttggtt 29500259  T

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Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 40499572 - 40499433
Alignment:
Q  122 gatctgcgaacggagaagaggaagagattgtgaaaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtgcaa 221  Q
    |||||| ||||  ||||||| |||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  40499572 gatctgtgaacaaagaagagaaagagattgtaaaaactaccaaactatccctatcgcgtgaaattatcaaactacccctgccacatcagcagtggtgcaa 40499473  T
Q  222 agaggtgtatgaaaaagagtggtctatgtgtctttttcct 261  Q
    || || ||||  ||||||||||||||||| ||||||||||    
T  40499472 aggggcgtatagaaaagagtggtctatgtatctttttcct 40499433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 39037402 - 39037456
Alignment:
Q  155 aaactaccaaactatccct-agcgcgtgaaattaccaaactacccctgccacatc 208  Q
    |||||||||||||| |||| | ||||||||||||||||||||||| |||||||||    
T  39037402 aaactaccaaactaccccttatcgcgtgaaattaccaaactacccttgccacatc 39037456  T

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Target: chr6 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 119 - 260
Target Start/End: Original strand, 14526792 - 14526933
Alignment:
Q  119 acggatctgcgaacggagaagaggaagagattgtgaaaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtg 218  Q
    ||||||||| |||| |||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||  |||||| || ||||     
T  14526792 acggatctgtgaacagagaagaggaagagattgcgaaaactatcaaactatcactagcgcgtgaaattaccaaactacccctgtaacatcaacactggta 14526891  T
Q  219 caaagaggtgtatgaaaaagagtggtctatgtgtctttttcc 260  Q
    ||||| |||||||  ||||||||||||||||| |||||||||    
T  14526892 caaaggggtgtatagaaaagagtggtctatgtatctttttcc 14526933  T

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Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 12489606 - 12489525
Alignment:
Q  180 tgaaattaccaaactacccctgccacatcagcagtggtgcaaagaggtgtatgaaaaagagtggtctatgtgtctttttcctt 262  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |  || |||||||||||| |||||||||||    
T  12489606 tgaaattaccaaactacccctgccacatcagcagtggtacaaaggggtgtat-attaaaagtggtctatgtatctttttcctt 12489525  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 43016535 - 43016466
Alignment:
Q  154 aaaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtgcaaag 223  Q
    ||||||||||||||| |||||||   |||||||| ||| ||||||||||||||||||||||||| |||||    
T  43016535 aaaactaccaaactacccctagcatatgaaattagcaatctacccctgccacatcagcagtggtacaaag 43016466  T

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Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 35495405 - 35495300
Alignment:
Q  155 aaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtgcaaagaggtgtatgaaaaagagtggtctatgtgtct 254  Q
    |||||||||||||| | |||  || ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |   |||||||||| ||| |||    
T  35495405 aaactaccaaactacctctattgcatgaaattaccaaactacccctaccacatcagcagtggtgcaaaggggtgtat-attgagagtggtctctgtatct 35495307  T
Q  255 ttttcct 261  Q
    |||||||    
T  35495306 ttttcct 35495300  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 23112224 - 23112156
Alignment:
Q  155 aaactaccaaactatccctagcgcgtgaaattaccaaactacccctgccacatcagcagtggtgcaaag 223  Q
    |||||||||||||| | |||  ||||||||||| ||||| |||||| |||||||||||||||| |||||    
T  23112224 aaactaccaaactacctctattgcgtgaaattatcaaaccacccctaccacatcagcagtggtacaaag 23112156  T

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