View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_low_8 (Length: 614)
Name: NF20619_low_8
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Original strand, 29525673 - 29526268
Alignment:
| Q |
1 |
caaagttcagataattgttttcccacatccctgagatatataattgagcttttacacatctagagcaccatcattgattctcctttaagaatcagtatga |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29525673 |
caaaattcagataattgttttcccacatccctgagatatataattgagtttttacacatctagagcaccatcattgattctcctttaagaatcactatga |
29525772 |
T |
|
| Q |
101 |
atccctcaatcaatactcttaccatttcttgctgttaatcttatctgattcttagcactcgaggtatgaaaattaataatgaataattttctctcctaag |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29525773 |
atccctcaatcaatactcttaccatttcttgcggttaatcttatctgattcttagcactcaaggtatgaaaattaataatgaataattttctctcctaag |
29525872 |
T |
|
| Q |
201 |
actttatatatagccattagccaaagtacaagttagttacaaccacactaacagaaaacaattaactgccaagcttgattgggaaggcacacaattagta |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29525873 |
actttatatatagccattagccaaagtagaagttagttacaaccacattaacagaaaacaattaactgccaagcttgattgggaaggcacacaattagta |
29525972 |
T |
|
| Q |
301 |
aggcaaagtgatttgcttcactgatcttcaaacaagtcagaccccttaagtaaatttaatcatcaattaacattgattcttagcaaatctcgaaaatgtt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29525973 |
aggcaaagtgatttgcttcactgatcttcaaaaaagtcagaccccttaagtaaatttaatcatcaattaacattgattcttagcaaatctcgaaaatgtt |
29526072 |
T |
|
| Q |
401 |
taataaaaaatgtttaaatttgctaagaggaatcggtttggtgatcatatctgcaggattgtactaagtatggaactcgaccacatcaatcaatttaann |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29526073 |
taataaaaaatgtttaaatttgctaagaggaatcggtttagtgatcatatctgcaggattgtactaagtatggaacttgaccacatcaatcaatttaatt |
29526172 |
T |
|
| Q |
501 |
nnnnnncaataacatctcttatgaaatcgagcctaacatcaatgcattaggtgctttcatgatacatttgattttttctcaagtaaattgaacttt |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29526173 |
ttttttcaataacatctcttatgaaatcgagcctaacatcaatgcattaggtgctttcatgatacatttgattttttctcaagtaaattgaacttt |
29526268 |
T |
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