View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2061_high_1 (Length: 679)
Name: NF2061_high_1
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 18 - 674
Target Start/End: Original strand, 30629639 - 30630293
Alignment:
| Q |
18 |
ctcctaactcctctatatggcctcttaggtgatgatgattgtaccaattgagttgaattggatgaaacttcttgtgactccgtgctgacttgagagtttg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30629639 |
ctcctaactcctctatatggcctcttaggtgatgatgattgtaccaattgagttgaattggatgatacttcttgtgactccgtgctgacttgagagtttg |
30629738 |
T |
|
| Q |
118 |
aagtgttcgagttggaatcggaggttgatgactctttgaatatttgtgtgttttggtcagtgaaattcatgggaaaggtgttattgttaatgttgttgtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30629739 |
aagtgttcgagttggaatcggaggttgatgactctttgaatatttgtgtgttttggtcagtgaaattcatgggaaaggtgttattgttaatgttgttgtc |
30629838 |
T |
|
| Q |
218 |
ttcattgaagaaaaagaaatcgtccaatgaaaaggattctaaaaaagaagaggaattttcaaatgaagtgtcaaggttttggtattggaattggaagaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30629839 |
ttcattgaagaaaaagaaatcgtccaatgaaaaggattctaaaaaagaagaggaattttcaaatgaagtgtcaaggttttggtattggaattggaagaat |
30629938 |
T |
|
| Q |
318 |
gaagaatcaaaatccatgtcttgtgggactaaaaaagtggacacaatattttaagtgttatgtttttcttttcttaactactttatgatttggggtgttt |
417 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30629939 |
gaagattcaaaatccatgtcttgtgggactaaaaaagtggacacaatattttaagcgttatgtttttcttttcttaactactttatgatttggggtgttt |
30630038 |
T |
|
| Q |
418 |
ggctcctttatatactcattgaaaaaaggaaacatataacgaccaaatagataaagaaaaaatgattaaattagttataataaagtgatgttgaaagatt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30630039 |
ggctcctttatatactcattgaaaaaaggaaacatataacgaccaaatagataaagaaaaaatgattaaattagttataataaagtgatgttgaaagatt |
30630138 |
T |
|
| Q |
518 |
ctggtcaaggggggatgtgtttggatatccannnnnnnnnatcagtcgtgaattacaaagggttggcacgtgagtcaaagaaacattatagaaacgtggg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30630139 |
ctggtcaaggggggatgtgtttggatatcca--ttttttcatcagtcgtgaattacaaagggttggcacgtgagtcaaagaaacattatagaaacgtggg |
30630236 |
T |
|
| Q |
618 |
caactcatctattagaaggttcgaaatcaaagggttggccattactcctatgctact |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30630237 |
caactcatctattagaaggttcgaaatcaaagggttggccattactccaatgctact |
30630293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 21 - 342
Target Start/End: Original strand, 30624011 - 30624314
Alignment:
| Q |
21 |
ctaactcctctatatggcctcttaggtgatgatgattgtaccaattgagttgaattggatgaaacttcttgtgactccgtgctgacttgagagtttgaag |
120 |
Q |
| |
|
||||||||| | |||| | |||||||||||||||||||||| | ||| |||||||||||||||||||||||||| || |||||| |||||| ||||||| |
|
|
| T |
30624011 |
ctaactcctttgtatgacttcttaggtgatgatgattgtactagttgtgttgaattggatgaaacttcttgtgattcattgctgatttgagaatttgaag |
30624110 |
T |
|
| Q |
121 |
tgttcgagttggaatcggaggttgatgactctttgaatatttgtgtgttttggtcagtgaaattcatgggaaaggtgttattgttaatgttgttgtcttc |
220 |
Q |
| |
|
|| | || ||||||| ||||||||||| |||||||||||||||| |||||| ||| ||||| || || |||||||||||| |
|
|
| T |
30624111 |
tgctggaattggaataagaggttgatgattctttgaatatttgtgcactttggt---------tcaagggaagagtttt---------gttgttgtcttc |
30624192 |
T |
|
| Q |
221 |
attgaagaaaaagaaatcgtccaatgaaaaggattctaaaaaagaagaggaattttcaaatgaagtgtcaaggttttggtattggaattggaagaatgaa |
320 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30624193 |
attgaagctaaagaaatcttcccatgaaaaggattctaaaaaagaagaggtatttgaaaatgaagtgtcaaggttttggtattggatttggaagaatgaa |
30624292 |
T |
|
| Q |
321 |
gaatcaaaatccatgtcttgtg |
342 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30624293 |
gaatcaaaatccatgtcttgtg |
30624314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University