View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_high_14 (Length: 412)
Name: NF2061_high_14
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 6058818 - 6058422
Alignment:
| Q |
1 |
aatgatggataagaagcagattaacaacttattcttggaatggttttcaagtgatgattgtacagattctcaaacagaaattgatatactttgcaaatta |
100 |
Q |
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| T |
6058818 |
aatgatggataagaagcagattaacaacttattcttggaatggttttcaagtgatgattgtacagattctcaaacagaaattgatatactttgcaaatta |
6058719 |
T |
|
| Q |
101 |
caaccttaccaagacctgaaattgctatcaataaatggctataggggtacaagatttccagattggattgggaattcttcgtatcacaatatgactagtc |
200 |
Q |
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| T |
6058718 |
caaccttaccaagacctgaaattgctatcaataaatggctataggggtacaagatttccagattggattgggaatccttcgtatcacaatatgactagtc |
6058619 |
T |
|
| Q |
201 |
taacaatctcttcttgtgagaattgttgtttgcttccttcacttgggcaactaacaactctcaagtacctcactatttcagatttgaatgggctagagac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6058618 |
taacaatctcttcttgtgagaattgttgtttgcttccttcacttgggcaactaacaactctcaagtacctcactatttcagatttgaatgggctagagac |
6058519 |
T |
|
| Q |
301 |
tatagatgatagtttctacaaaaacggagattcttcttcttcggtaacaccatttcctttgcttgaatttcttgaatttgaaaacatgccttgttgg |
397 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6058518 |
tatagatggtagtttctacaaaaacggagattcttcttcttccgtaacaccatttcctttgcttgaatttcttgaatttgaaaacatgccttgttgg |
6058422 |
T |
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