View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_high_17 (Length: 383)
Name: NF2061_high_17
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 47893767 - 47894124
Alignment:
| Q |
18 |
actgaccaattccgaatgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgactggacggactgtccatactctcatcccggcgaaaaag |
117 |
Q |
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| T |
47893767 |
actgaccaattccgaatgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgactggacggactgtccatactctcatcccggtgaaaaag |
47893866 |
T |
|
| Q |
118 |
ctcgccggagagaccctcaaaaatacaattattccggcaatccttgccctgagtttcgcaaattaggaaactgcaccaaaggtgattcttgccacttcgc |
217 |
Q |
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| T |
47893867 |
ctcgccggagagaccctcaaaaatacaattattccggcaatccttgcccggagtttcgcaaattaggaaactgcaccaaaggtgattcttgccacttcgc |
47893966 |
T |
|
| Q |
218 |
tcatggtgtttttgaatgctggcttcatccttctcgttacagaactcagctttgtaacgacggaaccctttgccggagacgagtttgtttctttgctcat |
317 |
Q |
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| T |
47893967 |
tcatggtgtttttgaatgctggcttcatccttctcgttacagaactcagctttgtaacgacggaaccctttgccggagacgagtttgtttctttgctcat |
47894066 |
T |
|
| Q |
318 |
accattgatcaactccgtgtctcagataacgcttcaccggaatcatttgtttcatctc |
375 |
Q |
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| T |
47894067 |
accattgatcaactccgtgtctcaaataacgcttcaccggaatcatttgtttcatctc |
47894124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 284
Target Start/End: Complemental strand, 42926429 - 42926175
Alignment:
| Q |
27 |
ttccgaatgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgactggacggactgtccatactctcatcccggcgaaaaagctcgccgga |
126 |
Q |
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| T |
42926429 |
ttccgcatgttcgagttcaagattcgtcgatgcgcacgtggcaggtctcatgactggacggagtgtcctttttctcatcccggcgagaaagctcgccgcc |
42926330 |
T |
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| Q |
127 |
gagaccctcaaaaatacaattattccggcaatccttgccctgagtttcgcaaattaggaaactgcaccaaaggtgattcttgccacttcgctcatggtgt |
226 |
Q |
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| T |
42926329 |
gtgacccgagaaagtataactactccggcacttcatgtcctgattttcgtaa---aggaagttgcaagaaaggtgattcgtgtgagtttgctcatggtgt |
42926233 |
T |
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| Q |
227 |
ttttgaatgctggcttcatccttctcgttacagaactcagctttgtaacgacggaacc |
284 |
Q |
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| T |
42926232 |
tttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaacc |
42926175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 38748222 - 38748172
Alignment:
| Q |
213 |
ttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaact |
263 |
Q |
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| T |
38748222 |
ttcgctcatggcgtttttgaatgctggcttcatcctgctagatacagaact |
38748172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 34340199 - 34340261
Alignment:
| Q |
62 |
acgtggtaggtcccatgactggacggactgtccatactctcatcccggcgaaaaagctcgccg |
124 |
Q |
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| T |
34340199 |
acgtggaagatcacatgactggacggagtgtccatacgcacatcccggcgagaaagcacgccg |
34340261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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