View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2061_high_25 (Length: 343)
Name: NF2061_high_25
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 43052416 - 43052076
Alignment:
| Q |
1 |
ctaataataaatctccatggaacatgagaatgcatcttgttagcaagccattcaataagattttattatgattgacgacagagttaaacttacaaacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43052416 |
ctaataataaatctccatggaacaagaaaatgcattttgtttgcaagccattcaataagattttattatgattgacgacagagttaaacttacaaacaat |
43052317 |
T |
|
| Q |
101 |
agacaacttttaaaatctcaaattgttattatctgcaacaactcccgattcagggttgcaatgtgaaatacagaccatataaaaatgaaaagat------ |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43052316 |
agacaacttttaaaatctcaaattgttattatctgcaacaactcccgattcagggttgcaatgtgaaatacagaccatataaaaatgaaaagataaaaaa |
43052217 |
T |
|
| Q |
195 |
-nnnnnnnnncaaagaatagtttccaattaagaaacagatgatgaaatcatc--agagtcccgtgtctacaggccctgatcaatgaggtaatctcccaac |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43052216 |
aaaaaaaaaacaaagaatagtttccaattaagaaacagatgatgaaatcatcatagagtcccgtgtctacaggccctgatcaatgaggtaatctcccaac |
43052117 |
T |
|
| Q |
292 |
ctctcaacaaccatgttgcattgtccaggagtcacaggttc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43052116 |
ctctcaacaaccatgttgcattgtccaggagtcacaggttc |
43052076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 34172368 - 34172425
Alignment:
| Q |
276 |
gaggtaatctcccaacctctcaacaaccatgttgcattgtccaggagtcacaggttct |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
34172368 |
gaggtaatctcccaacctctcaacaaccatgttgcactgtccaggagtaacaggttct |
34172425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 34107504 - 34107538
Alignment:
| Q |
289 |
aacctctcaacaaccatgttgcattgtccaggagt |
323 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34107504 |
aacctcttaacaaccatgttgcattgtccaggagt |
34107538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University