View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_high_26 (Length: 342)
Name: NF2061_high_26
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 55173118 - 55172782
Alignment:
| Q |
1 |
gtaccatggtggaacaaactttggaagaacaacctctgccttcacaacaacccgttattacgatgaggcacctcttgatgaatacggtatggagaggcag |
100 |
Q |
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| T |
55173118 |
gtaccatggtggaacaaactttggaagaacaacctctgcctttacaacaacccgttattacgatgaggcacctcttgatgaatacggtatggagaggcag |
55173019 |
T |
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| Q |
101 |
ccaaaatggagccaccttagggacgcccacaaggctttgctcctttgcagaaaggctattctcggtggtgttcccactgtccaaaagctcaacgactacc |
200 |
Q |
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| T |
55173018 |
ccaaaatggagccaccttagggacgcccacaaggctttgctcctttgcagaaaggctattctcggtggtgttcccactgtccaaaagctcaacgactacc |
55172919 |
T |
|
| Q |
201 |
acgaggtacatataataatcattgttaagctatatatgcaacatgcgtgtatctccatcatgataactttgagaaatatataatgcatcgtgcaggttag |
300 |
Q |
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| T |
55172918 |
acgaggtacatataataatcattgttaagctatatatgcaacatgcgtgtatctctatcatgataactttgagaaatatataatgcatcgtgcaggttag |
55172819 |
T |
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| Q |
301 |
aatctttgagaagcctggaacaagcacaggttctgct |
337 |
Q |
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| T |
55172818 |
aatctttgagaagcctggaacaagcacatgttctgct |
55172782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 27722106 - 27722179
Alignment:
| Q |
8 |
ggtggaacaaactttggaagaacaacctctgccttcacaacaacccgttattacgatgaggcacctcttgatga |
81 |
Q |
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||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||| || || ||||||||||| |
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| T |
27722106 |
ggtggaacaaattttggtagaacaacctcagcctttacaacaacacgttactacgacgaagctcctcttgatga |
27722179 |
T |
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