View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2061_high_27 (Length: 337)

Name: NF2061_high_27
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2061_high_27
NF2061_high_27
[»] chr4 (3 HSPs)
chr4 (194-320)||(17694274-17694399)
chr4 (7-46)||(17694067-17694106)
chr4 (104-141)||(17694198-17694235)
[»] chr2 (1 HSPs)
chr2 (284-320)||(448940-448976)
[»] chr1 (3 HSPs)
chr1 (276-320)||(37583161-37583205)
chr1 (275-325)||(8514538-8514588)
chr1 (275-320)||(33603564-33603609)
[»] chr3 (1 HSPs)
chr3 (284-320)||(40485204-40485240)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 320
Target Start/End: Original strand, 17694274 - 17694399
Alignment:
Q  194 atttaagactcgatatctaatagttatctttattgaagannnnnnnnnnnngggttttctaagatttagggtctcaggtcctcatttttgagtggacctc 293  Q
    ||||||||| ||||||||||||||||||||||||| |||            ||||||||||||||  |||||||||  |||||||||||||||||||| |    
T  17694274 atttaagacccgatatctaatagttatctttattggagattttttttttt-gggttttctaagatccagggtctcacttcctcatttttgagtggacccc 17694372  T
Q  294 acattacttttcattaaaataatcatt 320  Q
    |||||||||||||||||||||||||||    
T  17694373 acattacttttcattaaaataatcatt 17694399  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 17694067 - 17694106
Alignment:
Q  7 atttgtttgttccctccagttttgcaatttgaattggtag 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17694067 atttgtttgttccctccagttttgcaatttgaattggtag 17694106  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 17694198 - 17694235
Alignment:
Q  104 atatataaatgatgtgatgtgacataaagaacactaaa 141  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17694198 atatataaatgatgtgatgtgacataaagaacactaaa 17694235  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 448976 - 448940
Alignment:
Q  284 agtggacctcacattacttttcattaaaataatcatt 320  Q
    ||||||||||||||||||||| |||||||||||||||    
T  448976 agtggacctcacattacttttaattaaaataatcatt 448940  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 37583205 - 37583161
Alignment:
Q  276 catttttgagtggacctcacattacttttcattaaaataatcatt 320  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||    
T  37583205 catttttaagtggacctcacactactttttattaaaataatcatt 37583161  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 8514538 - 8514588
Alignment:
Q  275 tcatttttgagtggacctcacattacttttcattaaaataatcattatatt 325  Q
    |||||||| ||||| ||||||| ||||||| ||||||||||||||| ||||    
T  8514538 tcatttttaagtgggcctcacactactttttattaaaataatcattgtatt 8514588  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 33603609 - 33603564
Alignment:
Q  275 tcatttttgagtggacctcacattacttttcattaaaataatcatt 320  Q
    |||||||| |||||||||||||| |||||| | |||||||||||||    
T  33603609 tcatttttaagtggacctcacatcactttttaataaaataatcatt 33603564  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 40485240 - 40485204
Alignment:
Q  284 agtggacctcacattacttttcattaaaataatcatt 320  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  40485240 agtggacctcacactactttttattaaaataatcatt 40485204  T

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