View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2061_high_28 (Length: 308)

Name: NF2061_high_28
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2061_high_28
NF2061_high_28
[»] chr5 (2 HSPs)
chr5 (163-285)||(39167942-39168064)
chr5 (1-55)||(39168226-39168281)
[»] chr8 (2 HSPs)
chr8 (209-282)||(18947002-18947077)
chr8 (209-282)||(18969862-18969937)
[»] chr4 (1 HSPs)
chr4 (202-282)||(37813155-37813236)
[»] chr7 (2 HSPs)
chr7 (216-282)||(16174952-16175020)
chr7 (202-254)||(1304749-1304801)
[»] chr6 (1 HSPs)
chr6 (202-254)||(3307452-3307504)
[»] chr1 (2 HSPs)
chr1 (202-254)||(33241010-33241062)
chr1 (202-254)||(43114676-43114728)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 39168064 - 39167942
Alignment:
Q  163 ttcaaagaaataaatttttcttaagtggtgattgttatatattaggataaacaaacacaaaattaattatgcttttacataaaatctctaaacaaaactc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168064 ttcaaagaaataaatttttcttaagtggtgattgttatatattaggataaacaaacacaaaattaattatgcttttacataaaatctctaaacaaaactc 39167965  T
Q  263 taaattattgaacgtcaaaaaca 285  Q
    |||||||||||| ||||||||||    
T  39167964 taaattattgaaagtcaaaaaca 39167942  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39168281 - 39168226
Alignment:
Q  1 aatatcacacatatcatcataggggtactccatcaccg-ctttttgtttttgacct 55  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39168281 aatatcacacatatcatcataggggtactccatcaccgcctttttgtttttgacct 39168226  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 18947002 - 18947077
Alignment:
Q  209 ataaacaaacacaaaattaattatgcttttacataaaatctctaaaca--aaactctaaattattgaacgtcaaaa 282  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||| |  || ||||||||||||||| |||||||    
T  18947002 ataaacaaacacaaaatcgattatgctttttcataaaatctctaaaaaataacctctaaattattgaatgtcaaaa 18947077  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 18969937 - 18969862
Alignment:
Q  209 ataaacaaacacaaaattaattatgcttttacataaaatctctaaacaa--aactctaaattattgaacgtcaaaa 282  Q
    |||||||||||| ||||  |||||||||||  |||||||||||||||||  | ||||||||||||||| |||||||    
T  18969937 ataaacaaacaccaaatcgattatgctttttaataaaatctctaaacaattacctctaaattattgaatgtcaaaa 18969862  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 37813155 - 37813236
Alignment:
Q  202 tattaggataaacaaacacaaaattaattatgcttttacataaaatctctaaaca-aaactctaaattattgaacgtcaaaa 282  Q
    ||||| ||| |||||||||||| || |||||| |||| |||||||| |||||| | || ||||||||||||||| |||||||    
T  37813155 tattacgattaacaaacacaaagttgattatgttttttcataaaatatctaaaaataatctctaaattattgaatgtcaaaa 37813236  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 16175020 - 16174952
Alignment:
Q  216 aacacaaaattaattatgcttttacataaaatctctaaaca--aaactctaaattattgaacgtcaaaa 282  Q
    ||||||||||| ||||||||||| |||||| |||||||| |  || |||||||||||| || |||||||    
T  16175020 aacacaaaattgattatgcttttgcataaagtctctaaaaaataatctctaaattattaaatgtcaaaa 16174952  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 1304801 - 1304749
Alignment:
Q  202 tattaggataaacaaacacaaaattaattatgcttttacataaaatctctaaa 254  Q
    ||||| |||||| || ||||||||| ||||||||||| |||||| ||||||||    
T  1304801 tattacgataaataatcacaaaattgattatgctttttcataaagtctctaaa 1304749  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 3307452 - 3307504
Alignment:
Q  202 tattaggataaacaaacacaaaattaattatgcttttacataaaatctctaaa 254  Q
    ||||| ||||||||||||||||||  ||| || |||| |||||||||||||||    
T  3307452 tattacgataaacaaacacaaaatagattctgatttttcataaaatctctaaa 3307504  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 33241062 - 33241010
Alignment:
Q  202 tattaggataaacaaacacaaaattaattatgcttttacataaaatctctaaa 254  Q
    ||||| ||||||||||||||||||  ||| || |||| |||||||||||||||    
T  33241062 tattacgataaacaaacacaaaatagattctgatttttcataaaatctctaaa 33241010  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 43114728 - 43114676
Alignment:
Q  202 tattaggataaacaaacacaaaattaattatgcttttacataaaatctctaaa 254  Q
    ||||| |||||| |||||||||||  |||||| |||| |||||||||||||||    
T  43114728 tattatgataaataaacacaaaatagattatgatttttcataaaatctctaaa 43114676  T

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