View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_high_3 (Length: 652)
Name: NF2061_high_3
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 612; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 13 - 652
Target Start/End: Complemental strand, 10012235 - 10011596
Alignment:
| Q |
13 |
aatatattataagtgatatgctacttatgaatatgaatgatatgaaacagaaaagtattcacagggaagcagaagcattagtgtttgaagtgaaggcata |
112 |
Q |
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| T |
10012235 |
aatatattataagtgatatgttacttatgaatatgaatgatatgaagcagaaaagtattcatagggaagcagaagcattagtgtttgaagtgaaggcata |
10012136 |
T |
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| Q |
113 |
tatggcttaacaagtggaaaaggaaagtggaatatgctttactactttcatgcaagtaatcctcagagacaaagaaataccactaaggaagcatcaatag |
212 |
Q |
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| T |
10012135 |
tatggcttaacaagtggaaaaggaaagtggaatatgctttactactttcatgcaagtaatcctcagagacaaagaaataccactaaggaagcatcaatag |
10012036 |
T |
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| Q |
213 |
tgtcatgtgggaagacacagtgtatggttcatttgaattagtcaacatagtaatgtatcaaaagcatgttatgataatcttctttgaatagaatagaagg |
312 |
Q |
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| T |
10012035 |
tgtcatgtgggaagacacagtgtatggttcatttgaattagtcaacatagtaatgtatcaaaagcatgttatgataatcttctttgaatagaatagaagg |
10011936 |
T |
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| Q |
313 |
aaaattgaaaaagaagtcttcacctgaatagcaatattgaaaattggtaatgtatgattaactcacacaaaaagcatgcaatgcaagtggggtaatgtat |
412 |
Q |
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| T |
10011935 |
aaatttgaaaaagaagtcttcacctgaacagcaatattgaaaattggtaatgtatgattaactcacacaaaaagcatgcaatgcaagtggggtaatgtat |
10011836 |
T |
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| Q |
413 |
tggagtgtgctcatatactaattgtgaagattcttatgtgtagggccaagtccctacataggtgaaaatatctactgtgcattcatcatcatgctactcc |
512 |
Q |
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| T |
10011835 |
tggagtgtgctcatatactaattgtgaagattcttatgtgtagggccaagtccctacataggtgaaaatatctactgtgcattcatcatcatgctactcc |
10011736 |
T |
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| Q |
513 |
cactaaaccttggatttggatattcctcttctattagccctaccaataaatcacatagacattgaacttcatactaacactaatatgtcgacacgtaata |
612 |
Q |
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| T |
10011735 |
cactaaaccatggatttggatattcctcttctattagccctaccaataaatcacataaacattgaacttcatactaacactaatatgtcgacacgtaata |
10011636 |
T |
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| Q |
613 |
tatcaaaggtgttaaccacagacacgtgaaggacatcaca |
652 |
Q |
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| T |
10011635 |
tatcaaaggtgttaaccacagacacgtgaaggacatcaca |
10011596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 77 - 385
Target Start/End: Complemental strand, 42171531 - 42171216
Alignment:
| Q |
77 |
ggaagcagaagcattagtgtttgaagtgaaggcatatatggcttaacaagtggaaaaggaaagtggaatatgctttactactttcatgcaagtaatcctc |
176 |
Q |
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| T |
42171531 |
ggaagcataagcattagtgtttgaagtgaaggcatatatggcttgacatgtggaaaaggaaagtggaatatgctttactagtttcatgcaagtaatcttc |
42171432 |
T |
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| Q |
177 |
agagacaaagaaataccactaaggaagcatcaatagtgtcatgtgggaagacacagtgtatggttcatttgaattagtc-------aacatagtaatgta |
269 |
Q |
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| T |
42171431 |
agagacaaagaaatactacagagggagcatcaatagtgtcatgtgggaagatacagtgtgtggtacatttgaattagtcaacagtcaacatagtaatgta |
42171332 |
T |
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| Q |
270 |
tcaaaagcatgttatgataatcttctttgaatagaatagaaggaaaattgaaaaagaagtcttcacctgaatagcaatattgaaaattggtaatgtatga |
369 |
Q |
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| T |
42171331 |
tcaaatgcatgttatgataatctcctttgaatagaacagaaggaaaattgaaaaagaagtcttcacctgaacagcaatattgaaaattggtgatgtatga |
42171232 |
T |
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| Q |
370 |
ttaactcacacaaaaa |
385 |
Q |
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| T |
42171231 |
ttaactcacacaaaaa |
42171216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 39309847 - 39309789
Alignment:
| Q |
313 |
aaaattgaaaaagaagtcttcacctgaatagcaatattgaaaattggtaatgtatgatt |
371 |
Q |
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| T |
39309847 |
aaaattgaaaaacaagtcttcacctgaacagtaatattgaaaattggtgatgtatgatt |
39309789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 56181916 - 56181880
Alignment:
| Q |
244 |
tttgaattagtcaacatagtaatgtatcaaaagcatg |
280 |
Q |
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| T |
56181916 |
tttggattagtcaacatagtaatgtatcaaaagcatg |
56181880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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