View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_high_30 (Length: 295)
Name: NF2061_high_30
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 49683026 - 49682741
Alignment:
| Q |
1 |
tcaatggatttttctcgtatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49683026 |
tcaatggatttttctcgtatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaaaag |
49682927 |
T |
|
| Q |
101 |
tctaacaacgttgacatgcgaagttctactgatactcgcaacttcgttaatgaaatcatccccgtcgccttttgattcacttaaaaccttcacagcaaca |
200 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49682926 |
tctaagaacgttgacatgcgaagttctattgatactcgcaacttcattaatgaaatcatccccgtcgccttttgattcacttaaaaccttcacagcaaca |
49682827 |
T |
|
| Q |
201 |
acacgctcatcatgtaatctccctttgtatacacttccgaaccctccttggcctagtttgtttctacaagagtttgttatattctt |
286 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
49682826 |
acacgctcatcacgtaacctccctttgtatacacttccgaaccctccttggcctaatttgtttctaaaagagtttgttattttctt |
49682741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 49710635 - 49710353
Alignment:
| Q |
1 |
tcaatggatttttctc---gtatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaa |
97 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49710635 |
tcaatggatttttctcttcgtatatgaacttctcaagagatccattaggcatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaa |
49710536 |
T |
|
| Q |
98 |
aagtctaacaacgttgacatgcgaagttctactgatactcgcaacttcgttaatgaaatcatccccgtcgccttttgattcacttaaaaccttcacagca |
197 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||||||||||||| |||||||||||| ||||| ||| |
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| T |
49710535 |
aagtctaacaacgttgacatgcgaagttctactaatactcgcaacttcattaataaaatcttcgccgtcgccttttggttcacttaaaactttcactgca |
49710436 |
T |
|
| Q |
198 |
acaacacgctcatcatgtaatctccctttgtatacacttccgaaccctccttggcctagtttgtttctacaagagtttgttat |
280 |
Q |
| |
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|||| ||||||||||| ||| |||||||||||||||||||| |||||||||| |||| |||||||||| ||||||| ||||| |
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| T |
49710435 |
acaatacgctcatcatttaacttccctttgtatacacttccgtaccctccttgtcctaatttgtttctaaaagagttagttat |
49710353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 49687931 - 49687643
Alignment:
| Q |
1 |
tcaatggatttttctc---gtatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaa |
97 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49687931 |
tcaatggatttttctcttcgtatatgaacttctcaagatatccattagacatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaa |
49687832 |
T |
|
| Q |
98 |
aagtctaacaacgttgacatgcgaagttctactgatactcgcaacttcgttaatgaaatcatccccgtcgccttttgattcacttaaaaccttcacagca |
197 |
Q |
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||| |||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||| ||| |
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| T |
49687831 |
aagcctaacaacattgatatgagaagttctactgatactcgcaacttcattaatgaaatcttcaccgtcaccttttgattcacttaaaaccttcactgca |
49687732 |
T |
|
| Q |
198 |
acaacacgctcatcatgtaatctccctttgtatacacttccgaaccctccttggcctagtttgtttctacaagagtttgttatattctt |
286 |
Q |
| |
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| ||||| |||||| |||| |||||| ||||||||||||||| ||||||||||||| | |||||||| |||||| |||||| ||||| |
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| T |
49687731 |
ataacacactcatctggtaacttcccttggtatacacttccgaagcctccttggcctaatatgtttctaaaagagtgtgttattttctt |
49687643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 49215330 - 49215062
Alignment:
| Q |
1 |
tcaatggatttttctcgt---atatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaa |
97 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||||||||||| |
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| T |
49215330 |
tcaatggatttttctcttcatatatgaacttctcaagagatccattaggcatgaattcatatattaatgcctttttagaattatccaaacagaaccccaa |
49215231 |
T |
|
| Q |
98 |
aagtctaacaacgttgacatgcgaagttctactgatactcgcaacttcgttaatgaaatcatccccgtcgccttttgattcacttaaaaccttcacagca |
197 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| || || ||||||||||||||||||||||| ||||| ||| |
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| T |
49215230 |
aagtctaacaacgttgacatgtgaagttctactaatactcgcaacttcattaataaaatcttcgccatcgccttttgattcacttaaaactttcactgca |
49215131 |
T |
|
| Q |
198 |
acaacacgctcatcatgtaatctccctttgtatacacttccgaaccctccttggcctagtttgtttcta |
266 |
Q |
| |
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|| | ||||||||||||||| ||||||||||||||| |||| ||||||| || |||| |||||||||| |
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| T |
49215130 |
actatacgctcatcatgtaacttccctttgtatacacctccgtaccctccctgacctaatttgtttcta |
49215062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 49714257 - 49714037
Alignment:
| Q |
18 |
tatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaaaagtctaacaacgttgacat |
117 |
Q |
| |
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||||| ||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49714257 |
tatattaacttttcaagggatccattaggcatgaattcatatattagtgcctttttagaaccatccaaacagaaccccaaaagtctaacaacgttgacat |
49714158 |
T |
|
| Q |
118 |
gcgaagttctactgatactcgcaacttcgttaatgaaatcatccccgtcgccttttgattcacttaaaaccttcacagcaacaacacgctcatcatgtaa |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||| || | ||| ||||| |||||| ||||||||||||| ||||| | |||||||||||| |
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| T |
49714157 |
gcgaagttctactgatactcgcaacttcgttgatgaaatcttcactgtcacctttggattcatttaaaaccttcaccgcaacggtattctcatcatgtaa |
49714058 |
T |
|
| Q |
218 |
tctccctttgtatacacttcc |
238 |
Q |
| |
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| ||||||||||||||||| |
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| T |
49714057 |
cttacctttgtatacacttcc |
49714037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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