View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_high_4 (Length: 644)
Name: NF2061_high_4
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 7 - 628
Target Start/End: Complemental strand, 43210142 - 43209521
Alignment:
| Q |
7 |
tagataatactgttggtatgctaatctaataatgcaaataaagaaaagtagtagtgcactaattggtctttttcttttaatagaaaacgacacacacttg |
106 |
Q |
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| T |
43210142 |
tagattatactgttggtatgctaatctaataatgcaaataaagaaaagtagtagtgcactaattggtctttttcttttaatagaaaacgacacacacttg |
43210043 |
T |
|
| Q |
107 |
catactaataataattaacaataatatctttgaatctctatctatatatcttgactttagtagcatagctttcataattggtgtgccatatgttattgtg |
206 |
Q |
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| T |
43210042 |
catactaataataattaacaataatatctttgaatctctatctatatatcttgactttagtagcatagctttcataattggtgtgccatatgttattgtg |
43209943 |
T |
|
| Q |
207 |
atcaaagaaaatatcagacaaagaaagaaagaaacaaacaaactactgttatcatcaatcattttgaaagaagatggagagcacacttaagtcctttaga |
306 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43209942 |
atcaaagaaaatatcagacaaagaaagaaacaaacaaacaaactactgttatcatcaatcattttggaagaagatggagagcacacttaagtcctttaga |
43209843 |
T |
|
| Q |
307 |
gatggtgagtcggtgctggacctcagcccaagatccgccgttggtggcggtgttgaggatgtatacggggcagattgtgctactgaggatcaacttgtca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
43209842 |
gatggtgagtcggtgctggacctcagcccaagatccgccgttggtggcggtgttgaggatgtctacggtgaagattgtgctactgaggatcaacttgtca |
43209743 |
T |
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| Q |
407 |
ccccttggaccttctctgttgccaggtacttacatcacatgacataataacttcatttactttttaactggttgtgttcattatcatgcatgcttatatg |
506 |
Q |
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| T |
43209742 |
ccccttggaccttctctgttgccaggtacttacatcacatgacataataacttcatttactttttaactggttgtgttcattatcatgcatgcttatatg |
43209643 |
T |
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| Q |
507 |
ttatcatcaacgtttaatgaatgcttggatttatagaataattaagtcaaatcgttagactatatgcnnnnnnnacaagttatttggtagagtttgcgaa |
606 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43209642 |
ttatcatcaacgtttaatgaatgcttggatttattgaataattaagtcaaatcgttagactatatgctttttttacaagttatttggtagagtttgcgaa |
43209543 |
T |
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| Q |
607 |
aataagctgaaaataacttatg |
628 |
Q |
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|||||||||||||||||||||| |
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| T |
43209542 |
aataagctgaaaataacttatg |
43209521 |
T |
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