View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2061_high_42 (Length: 250)
Name: NF2061_high_42
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39168323 - 39168552
Alignment:
| Q |
1 |
tttcatttggagcagatcctcgttaccaacgtttatagttgccttgttggtgttgttaggagaatcattcacaacgatcaaggtttttctttctatttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39168323 |
tttcatttggagcagatcctcgttaccaacgtttatagttgccttgttggtgtt---aggagaatcattcacaacgatcaaggtttttctttctatttca |
39168419 |
T |
|
| Q |
101 |
atagtg-agtgtagctcgtgctggacatcttgtggattgtataaggcgcacagttcctatcaagactcgttgtcattccattccttctgagattaaatac |
199 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39168420 |
gtagtgtagtgtagctcgtgctggacatcttgtggattgtataaggcgcacagttcctatcaagactcgttgtgattccattccttctgagattaaatac |
39168519 |
T |
|
| Q |
200 |
cannnnnnngttgaaatcgtcccaattttctgc |
232 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
39168520 |
catttttttgttgaaatcgtcccaattttctgc |
39168552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University