View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2061_high_44 (Length: 248)

Name: NF2061_high_44
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2061_high_44
NF2061_high_44
[»] chr8 (1 HSPs)
chr8 (1-107)||(14685313-14685420)
[»] chr5 (5 HSPs)
chr5 (1-107)||(2357678-2357785)
chr5 (172-233)||(2357851-2357912)
chr5 (39-107)||(43095058-43095127)
chr5 (64-107)||(28872252-28872295)
chr5 (64-107)||(28873697-28873740)
[»] chr7 (1 HSPs)
chr7 (1-107)||(35324036-35324144)
[»] chr2 (2 HSPs)
chr2 (1-107)||(5989397-5989505)
chr2 (9-107)||(5983442-5983542)
[»] chr3 (2 HSPs)
chr3 (1-104)||(12221669-12221773)
chr3 (39-107)||(27237252-27237321)
[»] chr6 (1 HSPs)
chr6 (39-107)||(7534130-7534199)
[»] scaffold0014 (1 HSPs)
scaffold0014 (4-105)||(34397-34488)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 14685420 - 14685313
Alignment:
Q  1 atgaagtatatatacatcaagtgatgtaacaaaacctgaaacaaattcctaacaaacttatta-ttcacatgcaagtaacttgagttagttacttcaagt 99  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  14685420 atgacgtatatatacatcaagtgatgtaacaaaacctgaaacaaattcctaacaaacttatcacttcacatgcaagtaacttgagttagttacttcaagt 14685321  T
Q  100 gcaagttt 107  Q
    ||||||||    
T  14685320 gcaagttt 14685313  T

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Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 2357678 - 2357785
Alignment:
Q  1 atgaagtatatatacatcaagtgatgtaacaaaacctgaaacaaattcctaacaaacttatta-ttcacatgcaagtaacttgagttagttacttcaagt 99  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  2357678 atgaagtatgtatacatcaagtgatgtaacaaaacctcaaacaaattcctaacaagcttattacttcacatgcaagtaacttgagttagttacttcaagt 2357777  T
Q  100 gcaagttt 107  Q
    ||||||||    
T  2357778 gcaagttt 2357785  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 2357851 - 2357912
Alignment:
Q  172 cattataagtttctttgcttgttgtaactatttgtttggatacatgatttttcttacttttt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2357851 cattataagtttctttgcttgttgtaactatttgtttggatacatgatttttcttacttttt 2357912  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 43095127 - 43095058
Alignment:
Q  39 aaacaaattcctaacaaacttatta-ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt 107  Q
    ||||||| || |||||||||||||| ||||||||||| |||||||| |||||||||| || |||||||||    
T  43095127 aaacaaactcttaacaaacttattacttcacatgcaactaacttgatttagttactttaattgcaagttt 43095058  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 28872252 - 28872295
Alignment:
Q  64 ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt 107  Q
    ||||| |||||||||||||||||||||||||||  |||||||||    
T  28872252 ttcacgtgcaagtaacttgagttagttacttcacatgcaagttt 28872295  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 28873697 - 28873740
Alignment:
Q  64 ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt 107  Q
    ||||| |||||||||||||||||||||||||||  |||||||||    
T  28873697 ttcacgtgcaagtaacttgagttagttacttcacatgcaagttt 28873740  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 35324036 - 35324144
Alignment:
Q  1 atgaagtatatatacatcaagtgatgtaacaaaacctgaaa-caaattcctaacaaacttatta-ttcacatgcaagtaacttgagttagttacttcaag 98  Q
    |||| ||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35324036 atgaggtatatatacatcaagtgatgtaacaaaatctgaaaacaaactcctaacaaacttattacttcacatgcaagtaacttgagttagttacttcaag 35324135  T
Q  99 tgcaagttt 107  Q
    |||||||||    
T  35324136 tgcaagttt 35324144  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 5989505 - 5989397
Alignment:
Q  1 atgaagtatatatacatcaagtgatgtaacaaaacctgaaa-caaattcctaacaaacttatta-ttcacatgcaagtaacttgagttagttacttcaag 98  Q
    |||| ||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5989505 atgaggtatatatacatcaagtgatgtaacaaaatctgaaaacaaactcctaacaaacttattacttcacatgcaagtaacttgagttagttacttcaag 5989406  T
Q  99 tgcaagttt 107  Q
    |||||||||    
T  5989405 tgcaagttt 5989397  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 5983542 - 5983442
Alignment:
Q  9 tatatacatcaagtgatgtaacaaaacctgaaa-caaattcctaacaaacttatta-ttcacatgcaagtaacttgagttagttacttcaagtgcaagtt 106  Q
    |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  5983542 tatatacatcaagtgatgtaacaaaatctgaaaacaaactcctaacaaacttattacttcacatgcaagtaacttgatttagttacttcaagtgcaagtt 5983443  T
Q  107 t 107  Q
    |    
T  5983442 t 5983442  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 12221669 - 12221773
Alignment:
Q  1 atgaagtatatatacatcaagtgatgtaacaaaacctgaaacaaattcctaacaaacttatta-ttcacatgcaagtaacttgagttagttacttcaagt 99  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||||   |||||||||| |||| ||| || |||||||||||||||||||||||||| ||    
T  12221669 atgaagtatatatgcatcaagtgaggtaacaaaaactgaaacaaaccgctaacaaactcattacttctcacgcaagtaacttgagttagttacttcatgt 12221768  T
Q  100 gcaag 104  Q
    |||||    
T  12221769 gcaag 12221773  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 27237321 - 27237252
Alignment:
Q  39 aaacaaattcctaacaaacttatta-ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt 107  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27237321 aaacaaactcttaacaaacttattacttcacatgcaagtaacttgagttagttacttcaagtgcaagttt 27237252  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 7534199 - 7534130
Alignment:
Q  39 aaacaaattcctaacaaacttatta-ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt 107  Q
    ||||||| || |||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  7534199 aaacaaactcttaacaaacttattacttcacatataagtaacttgagttagttacttcaagtgcaagttt 7534130  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 34488 - 34397
Alignment:
Q  4 aagtatatatacatcaagtgatgtaacaaaacctgaaacaaattcctaacaaacttatta-ttcacatgcaagtaacttgagttagttacttcaagtgca 102  Q
    |||||| |||||||||||||||||||||||||           |||||||||||| |||| ||||||| |||||||||| ||||||||||||||  ||||    
T  34488 aagtatttatacatcaagtgatgtaacaaaac-----------tcctaacaaactcattacttcacatacaagtaactttagttagttacttcacatgca 34400  T

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