View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_high_46 (Length: 246)
Name: NF2061_high_46
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_46 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 40811985 - 40811749
Alignment:
| Q |
13 |
atacttttacaaaaactaagaaaaataattaataattaaatacgttnnnnnnnnn---taaaccaggtactcttgggagaaaatatagtgataatattag |
109 |
Q |
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| T |
40811985 |
atacttttacaaaaactaagaaaaataattaataattaaatacgttaaaaaaaaaaaataaaccaggtactcttgggagaaaatatagtgataatattag |
40811886 |
T |
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| Q |
110 |
agaaaaatatgccctttcattgaaactgtatagcttactttgattattgatccaaatggtcgaatcttatgtcttcatgtactgtatgtactatgtacta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40811885 |
agaaaaatatgccctttcattgaaactgtatagcttactttgattattgatccaaatggtcgaatcttatgtcttcatgtactgtatgtactatgtacta |
40811786 |
T |
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| Q |
210 |
cattcagcataaaattcatgtcattgtactcttggga |
246 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
40811785 |
cattcagcataaaattcatgtcattgtactcttggga |
40811749 |
T |
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