View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_high_47 (Length: 244)
Name: NF2061_high_47
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_47 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 4423516 - 4423737
Alignment:
| Q |
17 |
acactctccatgaatattctaaagcgctagtgaatagactcaacaaaacatcnnnnnnnataaaagtagcttcatgattttccttttatgatgtgctcac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
4423516 |
acactctccatgaatattctaaagcgctagtgaatagactcaacaaaacatctttttt-ataaaagtagcttcatgattttccttttatgatgtgttcac |
4423614 |
T |
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| Q |
117 |
agctcacacaaatcatatataacataaaataaaaaaggctacactaaattttttagagaaaattcattcaaaaatttcatgttttaattaattatcatac |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4423615 |
agctcacaca-----tatataacataaaataaaaaaggctacactaaattttttagagaaaattcattcaaaaattccatgttttaattaattatcatac |
4423709 |
T |
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| Q |
217 |
actttgtgtacacttttattaaaaagtt |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4423710 |
actttgtgtacacttttattaaaaagtt |
4423737 |
T |
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