View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_high_49 (Length: 243)
Name: NF2061_high_49
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_49 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1895675 - 1895913
Alignment:
| Q |
1 |
ttctgttcttcttcctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaacatatttatataacttagta |
100 |
Q |
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| T |
1895675 |
ttctgttcttcttcctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaacatatttatataacttagta |
1895774 |
T |
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| Q |
101 |
aatgtttgaattgacggtgagtttaacagaatcacgctacaagaattttggcaacaaggtgctaccaagattttgtcaaattcaccgtgattttaacaaa |
200 |
Q |
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| T |
1895775 |
aatgtttgaattgacggtgagtttgacagaatcacgctataagaattttggcaacaaggtgctaccaagattttctcaaattcaccgtgattttaacaaa |
1895874 |
T |
|
| Q |
201 |
agccacccttgattaatttctttatgttttgcatttcat |
239 |
Q |
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| T |
1895875 |
atccacccttgattaatttctttatgttttgcatttcat |
1895913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 1905514 - 1905706
Alignment:
| Q |
1 |
ttctgttcttcttcctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaacatatttatataacttagta |
100 |
Q |
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| T |
1905514 |
ttctgttcttcttcctgtcactcttttcaatagaagtagaaggttcacatttatttattgcaatattcatcaacatacaacatatgtatataacttggtg |
1905613 |
T |
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| Q |
101 |
aatgtttgaattgacggtgagtttaacagaatcacgc----tacaagaattttggcaacaaggtgctaccaagattttgtcaaattcaccgtg |
189 |
Q |
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| T |
1905614 |
tctgtttggattgacggtgagtttgacaaaatcacgcatgttgcgaagattttggcaacacggtgcttccacgattttgtcaaattcaccgtg |
1905706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 17240698 - 17240731
Alignment:
| Q |
102 |
atgtttgaattgacggtgagtttaacagaatcac |
135 |
Q |
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| T |
17240698 |
atgtttgaattgacggtgagtttgacagaatcac |
17240731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 7873192 - 7873144
Alignment:
| Q |
88 |
atataacttagtaaatgtttgaattgacggtgagtttaacagaatcacg |
136 |
Q |
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| T |
7873192 |
atataacttagtacatgtttggattgacggtgagtttaacataatcacg |
7873144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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