View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2061_high_55 (Length: 235)
Name: NF2061_high_55
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_55 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 47894426 - 47894177
Alignment:
| Q |
4 |
aatatcagggacagggaccgaaacaacaccatcgtttgagttcaacctaccaaatttcgcatagattttggctctaagatctcttcctgattccaccctc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47894426 |
aatatcagggacagggaccgaaacaacaccatcgtttgagttcaacctaccaaatttctcatagattttggctctaagatctcttcctgattccaccctc |
47894327 |
T |
|
| Q |
104 |
tccataccaaccccttcatagtttgatggaagactcaaaaaaccacctcgtgg------------------agaacccatcttagacaccggactccatt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47894326 |
tccataccaaccccttcatagtttgatggaagactcaaaaaaccacctcgtggtcgtggagaaccaaacacagaacccatcttagacaccggactccatt |
47894227 |
T |
|
| Q |
186 |
catcaaccctaacactcctcatgaagccaactaattccctcacgttcacc |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47894226 |
catcaaccctaacactcctcatgaagccaactaattccctcacgttcacc |
47894177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University