View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_high_58 (Length: 220)
Name: NF2061_high_58
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_high_58 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 50625546 - 50625360
Alignment:
| Q |
18 |
gaccaaactaaccttaaataacacccaaagtaagaacattgttcataaattccacaaaaacaacacactcttgatttctagtaacaagagagaaaaaatg |
117 |
Q |
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| T |
50625546 |
gaccaaactaaccttaaataacaccgaaagtaagaacattgttcataaattccacaaaaacaacacactcttgatttctagtaacaagagagaaaaaatg |
50625447 |
T |
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| Q |
118 |
aagagagcctcaactaactttatgtcctttttccctctttatactcttcttctttcatgnnnnnnnctccaactcactcaatccttt |
204 |
Q |
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| T |
50625446 |
aagagagcctcaactaactttatgtcctttttccctctttatactcttcttctttcatgtttttttctcaaactcactcaatccttt |
50625360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 50620180 - 50620093
Alignment:
| Q |
87 |
cttgatttctagtaacaagagagaaaaaa-tgaagagagcctcaactaactttatgtcctttttccctctttatactcttcttctttc |
173 |
Q |
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| T |
50620180 |
cttgatttctagtaacaagagggaaaaaaatgaagagagcctcaactaattttatgtcctttttccctctttatactcttcttctttc |
50620093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 50623006 - 50622925
Alignment:
| Q |
18 |
gaccaaactaaccttaaataacacccaaagtaagaacattgttcataaattccacaaaaacaacacactcttgatttctagt |
99 |
Q |
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| T |
50623006 |
gaccaaactaaccttaaattgcaccccaagtatgaacatttgtcgttcattccgcaaaaacatcacactcttgattcctagt |
50622925 |
T |
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