View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2061_high_59 (Length: 218)

Name: NF2061_high_59
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2061_high_59
NF2061_high_59
[»] chr5 (1 HSPs)
chr5 (1-161)||(7673723-7673883)
[»] chr4 (3 HSPs)
chr4 (79-155)||(5919908-5919984)
chr4 (79-155)||(5930074-5930150)
chr4 (79-152)||(35881712-35881785)
[»] chr2 (1 HSPs)
chr2 (74-153)||(4533032-4533111)
[»] chr7 (2 HSPs)
chr7 (79-153)||(45886976-45887050)
chr7 (79-153)||(5852108-5852182)
[»] chr1 (1 HSPs)
chr1 (79-153)||(37742149-37742223)
[»] chr8 (1 HSPs)
chr8 (79-152)||(33061956-33062029)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 7673723 - 7673883
Alignment:
Q  1 ttggcgcttaacgtgtagcagcgaaattggaatgcgaaaaataaagtatatgtaaaagttcaaataaactatcaacacggtcccgtagctcagttggtta 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  7673723 ttggcgcttaacgtgtagcagcgaaattggaatgcgaaaagtaaactatatataaaagttcaaataaactatcaacgcggtcccgtagctcagttggtta 7673822  T
Q  101 gagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccataacttcga 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7673823 gagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccataatttcga 7673883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 5919984 - 5919908
Alignment:
Q  79 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccataa 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5919984 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccataa 5919908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 5930150 - 5930074
Alignment:
Q  79 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccataa 155  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5930150 ggtcctgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccataa 5930074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 35881785 - 35881712
Alignment:
Q  79 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggacca 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35881785 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcaagccccgccgggacca 35881712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 4533032 - 4533111
Alignment:
Q  74 aacacggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccat 153  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4533032 aacatggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccat 4533111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 45887050 - 45886976
Alignment:
Q  79 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccat 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45887050 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccat 45886976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 5852108 - 5852182
Alignment:
Q  79 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccat 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5852108 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccctgccgggaccat 5852182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 37742223 - 37742149
Alignment:
Q  79 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccat 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37742223 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggaccat 37742149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 33062029 - 33061956
Alignment:
Q  79 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggacca 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33062029 ggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgagccccgccgggacca 33061956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University