View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_11 (Length: 455)
Name: NF2061_low_11
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Original strand, 37137006 - 37137444
Alignment:
| Q |
16 |
caatgagtgatggttggattggatgggcattttcagcaccattttggcttttaggaaccggaggtatttgccttcttgttccacaagcaaagaaacctaa |
115 |
Q |
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| T |
37137006 |
caatgagtgatggttggattggatgggcattttcagcaccattgtggcttttaggaaccggaggtatttgccttcttgttccacaagcaaagaaacctaa |
37137105 |
T |
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| Q |
116 |
agtgtggggggtaccattagttccttggttaccttctttttctattgctattaatatattccttcttggatctattgataaagattcatatgtaaggttt |
215 |
Q |
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| T |
37137106 |
agtgtggggggtacctttagttccttggttaccttctttttctattgctattaatatattccttcttggatctattgataaagattcatatgtaaggttt |
37137205 |
T |
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| Q |
216 |
gggatatggtcagggattttgttgatttactattttctcattgggttgcatgcttcttatgatgcatcaaaggaggttgaaagcagacatactatggccc |
315 |
Q |
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| T |
37137206 |
gggatatggtcagggattttgttgatttactattttctcattgggttgcatgcttcttatgatgcatcaaaggaggttgaaagcagacatactatggccc |
37137305 |
T |
|
| Q |
316 |
aatatgttgataaagagattaacaatgttgaagaggaatgtaaaaattagagg-------------caaggtgttcttgtttagtgaatgtgaattgtgg |
402 |
Q |
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| T |
37137306 |
aatatgttgacaaagagattaacaatgttgaagaggaatgtaaaaattagaggcaaggtaattggccaaggtgttcttgtttagtgaatgtgaattgtgg |
37137405 |
T |
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| Q |
403 |
caaatgttagatatcaaagttattctatgtttctaagtc |
441 |
Q |
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| T |
37137406 |
caaatgttagatatcaaagttattctatgtttctaagtc |
37137444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 37110903 - 37110775
Alignment:
| Q |
102 |
gcaaagaaacctaaagtgtggggggtaccattagttccttggttaccttctttttctattgctattaatatattccttcttggatctattgataaagatt |
201 |
Q |
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| T |
37110903 |
gcaaagaagcctaaactatggggagttcctttggttccttggctaccttctttatccattgctattaacatattccttcttggatctattgatagaaaat |
37110804 |
T |
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| Q |
202 |
catatgtaaggtttgggatatggtcaggg |
230 |
Q |
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| T |
37110803 |
cgtatataaggtttgcgatttggacaggg |
37110775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 37119155 - 37119042
Alignment:
| Q |
102 |
gcaaagaaacctaaagtgtggggggtaccattagttccttggttaccttctttttctattgctattaatatattccttcttggatctattgataaagatt |
201 |
Q |
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| T |
37119155 |
gcaaagaagcctaagttatggggagttcctttggttccttggctaccttctttatccattgctatcaacatattccttcttggaactattgataaaaaat |
37119056 |
T |
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| Q |
202 |
catatgtaaggttt |
215 |
Q |
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| ||| |||||||| |
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| T |
37119055 |
cgtatataaggttt |
37119042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 29258794 - 29258840
Alignment:
| Q |
170 |
tatattccttcttggatctattgataaagattcatatgtaaggtttg |
216 |
Q |
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|||||| ||||||||||| ||||||||||| |||||| ||||||||| |
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| T |
29258794 |
tatatttcttcttggatcaattgataaagaatcatatataaggtttg |
29258840 |
T |
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