View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_13 (Length: 438)
Name: NF2061_low_13
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 5482690 - 5482959
Alignment:
| Q |
17 |
tctccaccctatcaaatatactatgtgcatatttgctattacaataactttgttcaaatgattttgattttgataaactcaccatgataacaaacatgta |
116 |
Q |
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| T |
5482690 |
tctctaccctatcaaatatactatgtgcatatttgctattacaataactttgtccaaatgattttgattttgataaactcaccataataacaaacatata |
5482789 |
T |
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| Q |
117 |
tattaaaatatatttagatatcgaattttaatgatatttaatcaagacatacatttttagttaaatatatatgtaagttgaaacagaattatcaacatca |
216 |
Q |
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| T |
5482790 |
tattaaaatatatttaggtatcgaattttaataatatctaatcaagacatacatttttagttaaatatatatgtaagttgaaacagaattattaacatca |
5482889 |
T |
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| Q |
217 |
ttggagatttacatataatctaccaattgtaaatttgagtcaatttaagatctagttgctcattaagtgc |
286 |
Q |
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| T |
5482890 |
ttggagatttacatataatctatcaattgtaaattttagtcaatttaagatctagttgctcattaagtgc |
5482959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 312 - 437
Target Start/End: Original strand, 5482986 - 5483112
Alignment:
| Q |
312 |
taatataattagctgtagtaaa-gtataacaaaacagacaatatctatgaagtatgaagatagatattacaaaaagtatgcgtggcaaagatgtggacaa |
410 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5482986 |
taatataattagctgtagtaaaagtataacaaaacagacaatatctatgaagtatgaagatagatattataaaaagtatgcgtggcaaagatgtggacaa |
5483085 |
T |
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| Q |
411 |
attatgttgatgatattcttcgacatc |
437 |
Q |
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| T |
5483086 |
attctgttgatgatatttttagacatc |
5483112 |
T |
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