View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_16 (Length: 386)
Name: NF2061_low_16
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 22807378 - 22807078
Alignment:
| Q |
1 |
gtgataataattttgcattagccttggaaggtttttgccaaagagcattgaaacaaaaaatgcggcgaaaggaaagaaagtgtaaagcactttgcaacca |
100 |
Q |
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| T |
22807378 |
gtgataataattttgcattagccttggaaggtttttgccaaagagcattgaaacaaaaaatgcggcgaaaggaaagaaagtgtaaagcactttgcaacca |
22807279 |
T |
|
| Q |
101 |
agtcacaaaactgtagtacagttctatattaaaactgcaagatcaagatccgtgagttaaaacaatgttgtcaaatagcaggctagaggctacagcaatg |
200 |
Q |
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| T |
22807278 |
agtcacaaaactgaagtacagttctctattaaaactgcaagatcaagatccgtgagttaaaacaatgttgtcaaatagcaggctataggctacagcaaag |
22807179 |
T |
|
| Q |
201 |
ctatagtgtagtggaatttgaataatcgctattttctgtgatacgctatttagtatgaaaggttgtcaaataatggctactgtggctctatagcattgta |
300 |
Q |
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| T |
22807178 |
ctatagtgtagtggaatttgaataatcgttattttctgtgatacactatttagtacgaaatgttgtcaaataatggctactgtggtactatagcattgta |
22807079 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
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| |
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| T |
22807078 |
g |
22807078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 22807054 - 22807008
Alignment:
| Q |
326 |
gcaatccgtgattgacaacaca-gtgttacaaatagaatgataccat |
371 |
Q |
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| T |
22807054 |
gcaatccgtgattgacaacacaggtgttaaaaatagaatgataccat |
22807008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 54842236 - 54842198
Alignment:
| Q |
234 |
ttctgtgatacgctatttagtatgaaaggttgtcaaata |
272 |
Q |
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| T |
54842236 |
ttctgtgatacgctatttagtataaaatgttgtcaaata |
54842198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 27678760 - 27678798
Alignment:
| Q |
308 |
aacaaactactattttttgcaatccgtgattgacaacac |
346 |
Q |
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|||||||||||||||||||||||||||||| || ||||| |
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| T |
27678760 |
aacaaactactattttttgcaatccgtgatagaaaacac |
27678798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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