View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_19 (Length: 380)
Name: NF2061_low_19
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 37405177 - 37405546
Alignment:
| Q |
1 |
agagaactgctaattcttgattaaagcaaacaaccagtcacatcataagagaggaaatacctggaaaacaacgaaggttttccgggcttaatacattgtt |
100 |
Q |
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| T |
37405177 |
agagaactgctaattcttgattaaagcaaacaaccagtcacatcataagagaggaaatacctgaaaaacaacgaaggttttccgggcttaatacattgtt |
37405276 |
T |
|
| Q |
101 |
attataactataagttcatttacacacttaaacagcacgtaaataaaattatttgattaacnnnnnnnttatgaataattaatgaataaatcagtggacc |
200 |
Q |
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| T |
37405277 |
attataactataagttcatttacacacttaaacagcacgtaaataaaattatttgattaacaaaaaaataatgaataattaatgattaaatcagtggacc |
37405376 |
T |
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| Q |
201 |
aatcaatgcaaaacttgaactctcatttttggaagaataatgggtaagaaacctggaggaaacattaactttaacattgatattgtcatttttggagtta |
300 |
Q |
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| T |
37405377 |
aatcaatgcaaaactggaactctcatttttggaagaataatgggtaagaaacctggaggaaacattaactttaacattgatattgtcatttttggagtga |
37405476 |
T |
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| Q |
301 |
gttgaaagtgaccatgtgaatatgtgatgcattgaacgtataaacttacaatataaatcctaacattctt |
370 |
Q |
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| T |
37405477 |
gttgaaagtgaccatgtgaatatgtgatgcattgaacatataaatttacaatataaatcctaacattctt |
37405546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 37346834 - 37346900
Alignment:
| Q |
226 |
tttttggaagaataatgggtaagaaacctggaggaaacattaactttaacattgatattgtcatttt |
292 |
Q |
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| T |
37346834 |
tttttggaagaattttgggtacgaaacatagaggaaacattaaatttaacatggatactgccatttt |
37346900 |
T |
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