View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_2 (Length: 673)
Name: NF2061_low_2
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 35401122 - 35401406
Alignment:
| Q |
10 |
ggacatcatcatcactagtctctttgaannnnnnnnnaccttttcaattaatggaacaataaataatctgaaactcttgatattataacacacgtcctta |
109 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35401122 |
ggacatcatcatcactagtctctttgaatttttttt-accttttcaattaatggaacaataaataatctgaaactcttgatattataacacacgtcctta |
35401220 |
T |
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| Q |
110 |
cgaacgtctattaaaatagatggaaatcatattgcatagtagtattataatttcttgatgtgtattattatatgaatatgatcatgcacatttcacaaac |
209 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35401221 |
cgaacgtctattaaaagagatggaaatcatattgaatagtagtattataatttcttgatgtgtattattatatgaatatgatcatgcacatttcacaaac |
35401320 |
T |
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| Q |
210 |
acaacatagcacaaggtgcaccaatattacaccaacacgtttatttcctcaaaataactatgtggcacaatgattatgtggaagtg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
35401321 |
acaacatagcacaaggtgcaccaatattacaccaacacgtttatttcctcaaaataaccatgtgggacaatgattatgtggaagtg |
35401406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 158 - 263
Target Start/End: Original strand, 11395991 - 11396093
Alignment:
| Q |
158 |
aatttcttgatgtgtattattatatgaatatgatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatattacaccaacacgtttatttcc |
257 |
Q |
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||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |
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| T |
11395991 |
aatttcttgatgtgtataat---atgattatgatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacacatttatttcc |
11396087 |
T |
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| Q |
258 |
tcaaaa |
263 |
Q |
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|||||| |
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| T |
11396088 |
tcaaaa |
11396093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 158 - 263
Target Start/End: Original strand, 11380613 - 11380715
Alignment:
| Q |
158 |
aatttcttgatgtgtattattatatgaatatgatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatattacaccaacacgtttatttcc |
257 |
Q |
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||||||||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| ||||||||| |
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| T |
11380613 |
aatttcttgatgtgtataat---atgattatgatcatgcacatttcacaaacacaatatagcacaaggtgcaccaatataacaacaacacatttatttcc |
11380709 |
T |
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| Q |
258 |
tcaaaa |
263 |
Q |
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|||||| |
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| T |
11380710 |
tcaaaa |
11380715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 11404038 - 11404115
Alignment:
| Q |
186 |
tatgatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatattacaccaacacgtttatttcctcaaaa |
263 |
Q |
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| T |
11404038 |
tatgatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatataacaacaacacatttatttcctcaaaa |
11404115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 11452722 - 11452796
Alignment:
| Q |
185 |
atatgatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatattacaccaacacgtttatttcctc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
11452722 |
atatgatcatgcacatttcacaaacacaacatagcacaaggtgcaccaatgttacaacaacaaatttatttcctc |
11452796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 11452647 - 11452697
Alignment:
| Q |
47 |
accttttcaattaatggaacaataaataatctgaaactcttgatattataa |
97 |
Q |
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| T |
11452647 |
accttttcaatgaatggaacaataaataatctgaaactcttgatattataa |
11452697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 11380546 - 11380595
Alignment:
| Q |
48 |
ccttttcaattaatggaacaataaataatctgaaactcttgatattataa |
97 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11380546 |
ccttttcaatgaatggaacaataaataatctgaaactcttgatattataa |
11380595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 11403949 - 11403995
Alignment:
| Q |
51 |
tttcaattaatggaacaataaataatctgaaactcttgatattataa |
97 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11403949 |
tttcaatgaatggaacaataaataatctgaaactcttgatattataa |
11403995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 627
Target Start/End: Original strand, 21324776 - 21324822
Alignment:
| Q |
581 |
tccaacattggtgctttcattagcttactctatgcctcccaaaccca |
627 |
Q |
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|||| |||||||||||||||| | |||||| |||||||||||||||| |
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| T |
21324776 |
tccatcattggtgctttcattggtttactccatgcctcccaaaccca |
21324822 |
T |
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